C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111786 SRSF9 9606 - 12:120461668-120469793 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229390 SRSF9-001 120461668-120469793 protein_coding
  ENST00000546942 SRSF9-002 120465139-120469718 retained_intron
  ENST00000548326 SRSF9-004 120461693-120463396 retained_intron
  ENST00000548792 SRSF9-003 120461711-120464943 retained_intron
  ENST00000550458 SRSF9-005 120463978-120469571 protein_coding
  ENST00000603963 SRSF9-006 120461762-120469639 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229390ENST00000548326ENST00000548792ENST00000550458ENST00000603963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229390 51.433±0.00 62.714±0.00 7.099±0.00 32.651±0.00 26.557±17.30 31.445±17.34 7.774±6.35 39.865±30.46 28.921±21.56 40.885±35.01 11.472±0.00 60.824±31.57 91.669±22.66 66.294±25.42
ENST00000548326 7.500±0.00 12.785±0.00 4.180±0.00 11.312±1.88 6.706±0.77 7.752±1.88 2.649±0.96 9.803±4.46 5.159±0.00 5.362±0.00 2.672±0.85 10.166±3.24 N/A N/A
ENST00000548792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.470±0.00
ENST00000550458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 176.378±0.00 119.782±0.00 120.780±0.00
ENST00000603963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.907±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006376 TAS mRNA splice site selection
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008097 srsf9 serine/arginine-rich splicing factor 9 protein_coding Danio_rerio
ENSMUSG00000029538 Srsf9 serine/arginine-rich splicing factor 9 protein_coding Mus_musculus

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