C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229390 SRSF9-001 ENSG00000111786 9606 - 12:120461668-120469793 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229390
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229390 51.433±0.00 62.714±0.00 7.099±0.00 32.651±0.00 26.557±17.30 31.445±17.34 7.774±6.35 39.865±30.46 28.921±21.56 40.885±35.01 11.472±0.00 60.824±31.57 91.669±22.66 66.294±25.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CQ CIL_0009CQ_0001 VISTA 12:119991644-120595694
CIL_0007ZA CIL_0007ZA_0001 VISTA 12:120240385-120840841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006376 TAS mRNA splice site selection
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031513 Srsf9-001 protein_coding Mus_musculus 0 1107
ENSMUST00000142318 Srsf9-003 processed_transcript Mus_musculus 0 584
ENSMUST00000149510 Srsf9-004 protein_coding Mus_musculus 0 518
ENSMUST00000144000 Srsf9-002 processed_transcript Mus_musculus 0 518

Loading