C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029538 Srsf9 10090 + 5:115327177-115333080 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031513 Srsf9-001 115327177-115333080 protein_coding
  ENSMUST00000142318 Srsf9-003 115328640-115332650 processed_transcript
  ENSMUST00000144000 Srsf9-002 115327656-115333009 processed_transcript
  ENSMUST00000149510 Srsf9-004 115330578-115333009 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031513ENSMUST00000142318ENSMUST00000144000
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031513 34.358±9.99 35.390±19.65 36.077±5.31 32.287±20.25 27.441±13.72 36.051±11.24 7.748±0.38 31.744±5.93 32.938±19.18 33.987±3.28 4.665±0.90 56.088±27.93 32.682±8.62 25.907±12.26
ENSMUST00000142318 N/A N/A N/A 64.866±0.00 3.319±0.00 N/A N/A N/A N/A N/A 3.256±0.00 58.957±0.00 39.488±23.06 35.148±21.19
ENSMUST00000144000 N/A N/A N/A N/A 1.301±0.00 N/A N/A N/A N/A N/A 2.140±0.38 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0009CQ CIL_0009CQ_0002 VISTA 5:115188390-115791906

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008097 srsf9 serine/arginine-rich splicing factor 9 protein_coding Danio_rerio
ENSG00000111786 SRSF9 serine/arginine-rich splicing factor 9 protein_coding Homo_sapiens

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