C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111846 GCNT2 9606 + 6:10492223-10629368 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265012 GCNT2-004 10585746-10629368 protein_coding
  ENST00000316170 GCNT2-001 10556007-10629368 protein_coding
  ENST00000379597 GCNT2-003 10528356-10629367 protein_coding
  ENST00000397423 GCNT2-002 10521332-10629367 processed_transcript
  ENST00000410107 GCNT2-010 10492223-10627222 protein_coding
  ENST00000459872 GCNT2-016 10556801-10619441 processed_transcript
  ENST00000461400 GCNT2-005 10529812-10621645 retained_intron
  ENST00000474518 GCNT2-014 10521485-10621422 processed_transcript
  ENST00000474983 GCNT2-007 10521309-10530267 retained_intron
  ENST00000475577 GCNT2-012 10521351-10626616 processed_transcript
  ENST00000483204 GCNT2-008 10527366-10529950 retained_intron
  ENST00000485764 GCNT2-017 10529797-10626464 processed_transcript
  ENST00000488742 GCNT2-015 10492226-10528707 processed_transcript
  ENST00000489225 GCNT2-009 10492224-10626972 processed_transcript
  ENST00000489819 GCNT2-013 10521420-10626557 processed_transcript
  ENST00000495262 GCNT2-006 10521351-10627077 protein_coding
  ENST00000498320 GCNT2-011 10521283-10529109 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265012ENST00000316170ENST00000379597ENST00000397423ENST00000410107ENST00000474518ENST00000483204ENST00000488742ENST00000495262ENST00000498320
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265012 N/A 0.171±0.00 N/A 0.131±0.07 N/A 1.633±0.00 1.761±0.80 N/A N/A 0.813±0.00 0.128±0.00 0.289±0.00 N/A N/A
ENST00000316170 N/A N/A N/A 0.068±0.00 0.676±0.00 0.971±0.00 0.795±0.00 N/A 0.733±0.00 N/A 0.146±0.00 0.080±0.00 0.145±0.00 N/A
ENST00000379597 0.172±0.00 N/A 0.701±0.00 0.058±0.00 0.352±0.19 1.420±1.11 0.761±0.00 1.893±1.06 1.482±0.00 N/A N/A 0.465±0.28 0.504±0.11 N/A
ENST00000397423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.201±0.00 N/A
ENST00000410107 N/A N/A N/A N/A 1.072±0.00 N/A 3.398±0.00 1.921±0.00 N/A 4.754±0.00 N/A N/A N/A N/A
ENST00000474518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.670±0.00 N/A 1.647±0.00
ENST00000483204 N/A N/A N/A N/A N/A N/A N/A N/A 0.597±0.00 N/A 0.136±0.00 N/A N/A N/A
ENST00000488742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.502±0.00
ENST00000495262 N/A N/A N/A N/A N/A N/A 1.652±0.00 0.815±0.00 N/A N/A N/A N/A 1.058±0.00 N/A
ENST00000498320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.357±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097A CIL_00097A_0001 VISTA 6:10093642-10694839
CIL_00086X CIL_00086X_0001 VISTA 6:10107199-10709812
CIL_000382 CIL_000382_0001 CGP 6:10393186-10629368

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005794 IEA Golgi apparatus
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006486 IEA protein glycosylation
GO:0007179 ISS transforming growth factor beta receptor signaling pathway
GO:0007275 TAS multicellular organismal development
GO:0008109 IMP N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity
GO:0008284 ISS positive regulation of cell proliferation
GO:0008375 IEA acetylglucosaminyltransferase activity
GO:0010608 ISS posttranscriptional regulation of gene expression
GO:0010718 ISS positive regulation of epithelial to mesenchymal transition
GO:0010812 ISS negative regulation of cell-substrate adhesion
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030335 ISS positive regulation of cell migration
GO:0034116 ISS positive regulation of heterotypic cell-cell adhesion
GO:0036438 IMP maintenance of lens transparency
GO:0051897 ISS positive regulation of protein kinase B signaling
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000021360 Gcnt2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme protein_coding Mus_musculus

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