C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HD domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111906 HDDC2 9606 - 6:125219962-125302078 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318787 HDDC2-001 125275350-125301974 nonsense_mediated_decay
  ENST00000398153 HDDC2-002 125275886-125301975 protein_coding
  ENST00000608284 HDDC2-005 125297487-125302078 protein_coding
  ENST00000608295 HDDC2-004 125275882-125301937 protein_coding
  ENST00000608456 HDDC2-010 125219962-125276217 processed_transcript
  ENST00000608461 HDDC2-007 125276955-125301958 retained_intron
  ENST00000608532 HDDC2-008 125277079-125293231 retained_intron
  ENST00000609021 HDDC2-003 125275886-125279414 retained_intron
  ENST00000609477 HDDC2-009 125221928-125301958 nonsense_mediated_decay
  ENST00000609574 HDDC2-006 125300277-125302072 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318787ENST00000398153ENST00000608461ENST00000609477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318787 N/A N/A 2.176±0.00 7.862±0.00 N/A 1.973±0.00 2.066±0.00 N/A 3.869±0.00 4.435±0.00 4.514±0.00 4.934±0.00 3.330±0.00 N/A
ENST00000398153 24.964±0.00 59.618±0.00 4.632±0.00 34.447±25.43 26.035±19.31 18.794±14.63 23.015±16.92 26.209±24.00 6.360±0.20 17.406±8.28 20.019±11.13 39.451±16.22 21.006±3.15 61.786±0.35
ENST00000608461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.475±0.00 19.985±0.00 N/A
ENST00000609477 N/A N/A N/A N/A 6.880±0.00 N/A N/A N/A N/A N/A 16.789±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OJ CIL_0008OJ_0001 VISTA 6:125040277-125641345
CIL_0008OC CIL_0008OC_0001 VISTA 6:125070031-125671092

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034957 hddc2 HD domain containing 2 protein_coding Danio_rerio
ENSMUSG00000000295 Hddc2 HD domain containing 2 protein_coding Mus_musculus

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