C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HD domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398153 HDDC2-002 ENSG00000111906 9606 - 6:125275886-125301975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398153 24.964±0.00 59.618±0.00 4.632±0.00 34.447±25.43 26.035±19.31 18.794±14.63 23.015±16.92 26.209±24.00 6.360±0.20 17.406±8.28 20.019±11.13 39.451±16.22 21.006±3.15 61.786±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OJ CIL_0008OJ_0001 VISTA 6:125040277-125641345
CIL_0008OC CIL_0008OC_0001 VISTA 6:125070031-125671092

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000304 Hddc2-001 protein_coding Mus_musculus 0 651
ENSMUST00000159194 Hddc2-005 nonsense_mediated_decay Mus_musculus 0 412
ENSMUST00000162076 Hddc2-003 retained_intron Mus_musculus 0 329
ENSMUST00000159659 Hddc2-004 retained_intron Mus_musculus 0 327
ENSMUST00000160447 Hddc2-002 retained_intron Mus_musculus 0 305

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