C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HD domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000000295 Hddc2 10090 + 10:31313382-31328204 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000000304 Hddc2-001 31313382-31328204 protein_coding
  ENSMUST00000159194 Hddc2-005 31313472-31328184 nonsense_mediated_decay
  ENSMUST00000159659 Hddc2-004 31320167-31328202 retained_intron
  ENSMUST00000160447 Hddc2-002 31313407-31317843 retained_intron
  ENSMUST00000162076 Hddc2-003 31313405-31317032 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000304ENSMUST00000159194ENSMUST00000159659ENSMUST00000160447ENSMUST00000162076
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000304 9.501±3.48 1.914±0.78 7.421±0.15 7.471±2.18 4.077±1.44 3.632±0.74 1.310±0.29 5.134±0.81 4.115±4.01 3.095±1.08 7.650±1.11 21.557±10.87 6.664±2.01 2.646±0.52
ENSMUST00000159194 N/A N/A N/A N/A N/A N/A N/A N/A 0.228±0.03 N/A N/A N/A N/A N/A
ENSMUST00000159659 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.01 N/A N/A 7.966±0.00 N/A 3.153±0.00
ENSMUST00000160447 0.822±0.02 0.553±0.21 N/A 0.280±0.00 0.230±0.06 0.389±0.16 N/A N/A 0.035±0.01 0.253±0.08 N/A 2.266±0.74 N/A N/A
ENSMUST00000162076 N/A N/A N/A N/A 1.093±0.52 1.361±0.23 0.218±0.03 N/A N/A 1.013±0.00 N/A 8.897±1.06 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OH CIL_0008OH_0002 VISTA 10:30727819-31328728
CIL_0008OI CIL_0008OI_0002 VISTA 10:30734051-31335579
CIL_0008OD CIL_0008OD_0002 VISTA 10:30753081-31354088
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675
CIL_000666 CIL_000666_0002 CGP 10:31313382-31445921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034957 hddc2 HD domain containing 2 protein_coding Danio_rerio
ENSG00000111906 HDDC2 HD domain containing 2 protein_coding Homo_sapiens

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