C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112081 SRSF3 9606 + 6:36594353-36605600 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339436 SRSF3-003 36594368-36600881 retained_intron
  ENST00000373715 SRSF3-001 36594368-36605600 protein_coding
  ENST00000477442 SRSF3-002 36594391-36602040 nonsense_mediated_decay
  ENST00000613941 SRSF3-006 36594353-36599845 nonsense_mediated_decay
  ENST00000614136 SRSF3-005 36600403-36602778 retained_intron
  ENST00000620242 SRSF3-008 36594367-36597189 retained_intron
  ENST00000620389 SRSF3-004 36599438-36602776 retained_intron
  ENST00000620941 SRSF3-007 36594592-36602197 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000339436ENST00000373715ENST00000477442ENST00000613941ENST00000614136ENST00000620242ENST00000620389ENST00000620941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000339436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.546±0.00 N/A N/A
ENST00000373715 6.390±0.00 12.682±0.00 1.792±0.00 7.037±2.71 5.748±2.50 3.708±0.01 2.158±0.00 5.107±3.12 4.243±0.93 4.144±0.00 N/A 12.889±8.32 4.537±0.46 13.295±0.00
ENST00000477442 29.302±0.00 N/A 6.460±0.00 N/A 13.460±0.00 20.756±0.00 N/A 4.428±0.00 N/A 53.972±0.00 21.563±4.98 89.566±22.53 48.843±27.12 72.273±0.00
ENST00000613941 81.892±0.00 111.604±0.00 N/A 34.369±19.19 66.047±0.00 40.465±0.00 N/A N/A N/A N/A N/A 115.389±0.00 90.301±0.00 71.188±8.31
ENST00000614136 N/A N/A N/A N/A N/A 3.318±0.00 N/A N/A N/A N/A N/A 10.351±0.00 27.607±0.00 N/A
ENST00000620242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 36.613±0.00 N/A N/A
ENST00000620389 11.125±0.00 20.665±0.00 2.257±0.00 7.261±0.29 11.003±4.05 7.290±0.32 3.017±0.94 3.366±0.00 8.168±0.00 8.898±0.00 N/A 24.351±10.65 N/A 20.913±3.77
ENST00000620941 38.691±0.00 63.589±0.00 3.893±0.00 21.850±12.45 28.897±12.93 20.947±7.03 5.786±0.00 4.675±0.00 N/A N/A 8.128±0.00 68.435±23.38 35.304±0.00 43.179±19.15

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025397 srsf3a serine/arginine-rich splicing factor 3a protein_coding Danio_rerio
ENSDARG00000059360 srsf3b serine/arginine-rich splicing factor 3b protein_coding Danio_rerio
ENSMUSG00000078134 Gm12355 predicted gene 12355 protein_coding Mus_musculus

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