C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477442 SRSF3-002 ENSG00000112081 9606 + 6:36594391-36602040 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyLungMuscleOvaryPlacentaTestisENST00000477442
Transcript ID Adipose Bladder Breast Colon Kidney Lung Muscle Ovary Placenta Testis
ENST00000477442 29.302±0.00 6.460±0.00 13.460±0.00 20.756±0.00 4.428±0.00 53.972±0.00 21.563±4.98 89.566±22.53 48.843±27.12 72.273±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037776 Srsf3-002 nonsense_mediated_decay Mus_musculus 0 1624
ENSMUST00000144551 Srsf3-004 retained_intron Mus_musculus 0 1123
ENSMUST00000147265 Srsf3-003 retained_intron Mus_musculus 0 848
ENSMUST00000130216 Srsf3-001 protein_coding Mus_musculus 0 503
ENSMUST00000075650 Gm9761-201 processed_pseudogene Mus_musculus 0 466
ENSMUST00000104933 Gm12355-001 protein_coding Mus_musculus 0 466
ENSMUST00000118967 Gm11922-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000150157 Srsf3-005 retained_intron Mus_musculus 0 283

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