C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatase and actin regulator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112137 PHACTR1 9606 + 6:12716805-13290484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000332995 PHACTR1-005 12716805-13290484 protein_coding
  ENST00000379329 PHACTR1-004 13272757-13283907 protein_coding
  ENST00000379335 PHACTR1-003 13272672-13287481 protein_coding
  ENST00000379348 PHACTR1-010 12718310-12934000 protein_coding
  ENST00000379350 PHACTR1-001 12717661-13276123 protein_coding
  ENST00000406205 PHACTR1-006 12749435-13184820 protein_coding
  ENST00000415087 PHACTR1-201 13053363-13287840 protein_coding
  ENST00000434977 PHACTR1-002 13053457-13230404 protein_coding
  ENST00000481706 PHACTR1-008 13278002-13283546 processed_transcript
  ENST00000482982 PHACTR1-011 12957359-13182578 processed_transcript
  ENST00000489548 PHACTR1-009 13272212-13286197 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000332995ENST00000379350ENST00000415087ENST00000434977
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000332995 N/A 6.692±0.00 0.714±0.08 N/A N/A N/A 3.613±0.00 0.207±0.00 1.195±0.41 1.133±0.00 1.807±0.00
ENST00000379350 N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A 0.921±0.00 N/A N/A
ENST00000415087 1.311±0.00 4.367±0.00 N/A 5.839±2.54 N/A N/A N/A 0.152±0.00 N/A N/A N/A
ENST00000434977 N/A N/A N/A N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0001 CGP 6:12290363-13290484
CIL_0001BV CIL_0001BV_0002 CGP 6:12716805-13328583

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 ISS actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse
GO:0048870 IMP cell motility

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023916 phosphatase and actin regulator 1 protein_coding Danio_rerio
ENSMUSG00000054728 Phactr1 phosphatase and actin regulator 1 protein_coding Mus_musculus

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