C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatase and actin regulator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054728 Phactr1 10090 + 13:42680623-43138526 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066928 Phactr1-002 42709543-43135401 protein_coding
  ENSMUST00000110161 Phactr1-201 42682698-43135189 protein_coding
  ENSMUST00000123987 Phactr1-012 43125920-43135249 processed_transcript
  ENSMUST00000127859 Phactr1-009 42866834-42956675 processed_transcript
  ENSMUST00000128646 Phactr1-001 42680623-43138524 protein_coding
  ENSMUST00000131942 Phactr1-005 42866247-43135304 protein_coding
  ENSMUST00000132050 Phactr1-004 42680799-42958901 retained_intron
  ENSMUST00000136576 Phactr1-006 43122857-43135411 processed_transcript
  ENSMUST00000136951 Phactr1-014 43132997-43134242 processed_transcript
  ENSMUST00000137434 Phactr1-010 43112133-43135383 processed_transcript
  ENSMUST00000138640 Phactr1-013 43122872-43135359 processed_transcript
  ENSMUST00000140651 Phactr1-011 43125888-43135249 processed_transcript
  ENSMUST00000148891 Phactr1-003 42709581-43138526 protein_coding
  ENSMUST00000149235 Phactr1-008 42681513-43135245 protein_coding
  ENSMUST00000150620 Phactr1-007 43125888-43135249 processed_transcript
  ENSMUST00000161201 Phactr1-015 43135384-43138513 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000066928ENSMUST00000110161ENSMUST00000123987ENSMUST00000128646ENSMUST00000131942ENSMUST00000136576ENSMUST00000137434ENSMUST00000140651ENSMUST00000148891ENSMUST00000149235
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066928 N/A N/A 67.481±0.00 N/A N/A N/A N/A N/A N/A 4.754±0.00 N/A N/A
ENSMUST00000110161 N/A N/A 88.489±0.00 N/A N/A N/A 0.070±0.00 N/A 0.228±0.00 3.294±0.00 N/A N/A
ENSMUST00000123987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.885±35.71
ENSMUST00000128646 N/A N/A 10.304±9.44 N/A N/A N/A 0.095±0.00 2.415±0.29 N/A N/A N/A N/A
ENSMUST00000131942 N/A N/A N/A N/A 0.235±0.00 N/A N/A N/A 0.194±0.00 1.732±0.00 N/A N/A
ENSMUST00000136576 N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A 100.358±57.38 N/A
ENSMUST00000137434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 51.504±9.85 N/A
ENSMUST00000140651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.737±24.25
ENSMUST00000148891 0.783±0.36 0.911±0.00 7.596±3.90 0.152±0.00 0.484±0.28 0.469±0.00 0.073±0.05 10.573±4.70 0.275±0.08 1.357±0.66 3.714±2.17 1.110±0.07
ENSMUST00000149235 N/A N/A 57.845±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0002 CGP 13:42301270-43138526
CIL_0001BV CIL_0001BV_0003 CGP 13:42680623-43171501

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 IDA nucleus
GO:0005829 IDA cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 IMP actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse
GO:0048870 IEA cell motility

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000023916 phosphatase and actin regulator 1 protein_coding Danio_rerio
ENSG00000112137 PHACTR1 phosphatase and actin regulator 1 protein_coding Homo_sapiens

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