C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatase and actin regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332995 PHACTR1-005 ENSG00000112137 9606 + 6:12716805-13290484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungMuscleOvaryPlacentaTestisENST00000332995
Transcript ID Brain Colon Lung Muscle Ovary Placenta Testis
ENST00000332995 6.692±0.00 0.714±0.08 3.613±0.00 0.207±0.00 1.195±0.41 1.133±0.00 1.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IC CIL_0003IC_0001 CGP 6:12290363-13290484
CIL_0001BV CIL_0001BV_0002 CGP 6:12716805-13328583

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0004864 IEA protein phosphatase inhibitor activity
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0030054 IEA cell junction
GO:0031032 IMP actomyosin structure organization
GO:0031532 ISS actin cytoskeleton reorganization
GO:0043086 IEA negative regulation of catalytic activity
GO:0043149 IMP stress fiber assembly
GO:0045202 IEA synapse
GO:0048870 IMP cell motility

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000128646 Phactr1-001 protein_coding Mus_musculus 0 2383
ENSMUST00000149235 Phactr1-008 protein_coding Mus_musculus 0 2313
ENSMUST00000066928 Phactr1-002 protein_coding Mus_musculus 0 2220
ENSMUST00000148891 Phactr1-003 protein_coding Mus_musculus 0 1491
ENSMUST00000131942 Phactr1-005 protein_coding Mus_musculus 0 1476
ENSMUST00000110161 Phactr1-201 protein_coding Mus_musculus 0 1345
ENSMUST00000132050 Phactr1-004 retained_intron Mus_musculus 0 610
ENSMUST00000136576 Phactr1-006 processed_transcript Mus_musculus 0 595
ENSMUST00000137434 Phactr1-010 processed_transcript Mus_musculus 0 593
ENSMUST00000140651 Phactr1-011 processed_transcript Mus_musculus 0 442
ENSMUST00000150620 Phactr1-007 processed_transcript Mus_musculus 0 442
ENSMUST00000123987 Phactr1-012 processed_transcript Mus_musculus 0 438
ENSMUST00000138640 Phactr1-013 processed_transcript Mus_musculus 0 425
ENSMUST00000161201 Phactr1-015 processed_transcript Mus_musculus 0 248
ENSMUST00000136951 Phactr1-014 processed_transcript Mus_musculus 4e-38 165

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