C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003IC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000078401-ENSG00000112137 CGP 9606 6:12290363-13290484
GeneTranscriptPositionBiotype
ENSG00000078401 (EDN1)
endothelin 1 		ENST00000379375 (EDN1-001) 12290363-12297194 protein_coding
ENSG00000112137 (PHACTR1)
phosphatase and actin regulator 1 		ENST00000332995 (PHACTR1-005) 12716805-13290484 protein_coding
ENST00000379329 (PHACTR1-004) 13272757-13283907 protein_coding
ENST00000379335 (PHACTR1-003) 13272672-13287481 protein_coding
ENST00000379348 (PHACTR1-010) 12718310-12934000 protein_coding
ENST00000379350 (PHACTR1-001) 12717661-13276123 protein_coding
ENST00000406205 (PHACTR1-006) 12749435-13184820 protein_coding
ENST00000415087 (PHACTR1-201) 13053363-13287840 protein_coding
ENST00000434977 (PHACTR1-002) 13053457-13230404 protein_coding
ENST00000481706 (PHACTR1-008) 13278002-13283546 processed_transcript
ENST00000482982 (PHACTR1-011) 12957359-13182578 processed_transcript
ENST00000489548 (PHACTR1-009) 13272212-13286197 processed_transcript
ENSG00000145979 (TBC1D7)
TBC1 domain family, member 7 		ENST00000343141 (TBC1D7-201) 13304954-13328583 protein_coding
ENST00000356436 (TBC1D7-008) 13304951-13328531 protein_coding
ENST00000379291 (TBC1D7-011) 13316698-13328531 protein_coding
ENST00000379300 (TBC1D7-009) 13304951-13328531 protein_coding
ENST00000379307 (TBC1D7-202) 13304954-13328583 protein_coding
ENST00000416436 (TBC1D7-001) 13316682-13328130 protein_coding
ENST00000420456 (TBC1D7-003) 13307600-13327818 protein_coding
ENST00000421203 (TBC1D7-014) 13274849-13328544 nonsense_mediated_decay
ENST00000422136 (TBC1D7-004) 13306445-13328531 protein_coding
ENST00000428109 (TBC1D7-002) 13316621-13328130 protein_coding
ENST00000446018 (TBC1D7-006) 13306491-13328531 protein_coding
ENST00000450347 (TBC1D7-010) 13306398-13328531 protein_coding
ENST00000452989 (TBC1D7-005) 13306398-13328531 protein_coding
ENST00000606214 (TBC1D7-012) 13266542-13326912 protein_coding
ENST00000606370 (TBC1D7-013) 13318718-13328555 protein_coding
ENST00000606530 (TBC1D7-016) 13326838-13328332 protein_coding
ENST00000606541 (TBC1D7-018) 13320832-13326912 protein_coding
ENST00000607208 (TBC1D7-017) 13307714-13320981 processed_transcript
ENST00000607230 (TBC1D7-015) 13323711-13328583 protein_coding
ENST00000607532 (TBC1D7-019) 13306645-13328544 processed_transcript
ENST00000607658 (TBC1D7-020) 13305618-13328458 protein_coding
ENSG00000206702 (RNU1-11P)
RNA, U1 small nuclear 11, pseudogene 		ENST00000383975 (RNU1-11P-201) 13214056-13214219 snRNA
ENSG00000212802 (RPL15P3)
ribosomal protein L15 pseudogene 3 		ENST00000391491 (RPL15P3-001) 12514110-12514724 processed_pseudogene
ENSG00000218893 (SUMO2P12)
SUMO2 pseudogene 12 		ENST00000405924 (SUMO2P12-001) 12319453-12319592 processed_pseudogene
ENSG00000223321 (RN7SKP293)
RNA, 7SK small nuclear pseudogene 293 		ENST00000411389 (RN7SKP293-201) 12406486-12406781 misc_RNA
ENSG00000234015 (RP11-125M16.1)
 ENST00000457945 (RP11-125M16.1-001) 12582915-12585404 lincRNA
ENSG00000272379 (RP1-257A7.5)
 ENST00000606393 (RP1-257A7.5-002) 13290018-13290490 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0003IC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021367-ENSMUSG00000054728 CGP 10090 13:42301270-43138526
GeneTranscriptPositionBiotype
ENSMUSG00000021367 (Edn1)
endothelin 1 		ENSMUST00000021796 (Edn1-201) 42301270-42307989 protein_coding
ENSMUSG00000054728 (Phactr1)
phosphatase and actin regulator 1 		ENSMUST00000066928 (Phactr1-002) 42709543-43135401 protein_coding
ENSMUST00000110161 (Phactr1-201) 42682698-43135189 protein_coding
ENSMUST00000123987 (Phactr1-012) 43125920-43135249 processed_transcript
ENSMUST00000127859 (Phactr1-009) 42866834-42956675 processed_transcript
ENSMUST00000128646 (Phactr1-001) 42680623-43138524 protein_coding
ENSMUST00000131942 (Phactr1-005) 42866247-43135304 protein_coding
ENSMUST00000132050 (Phactr1-004) 42680799-42958901 retained_intron
ENSMUST00000136576 (Phactr1-006) 43122857-43135411 processed_transcript
ENSMUST00000136951 (Phactr1-014) 43132997-43134242 processed_transcript
ENSMUST00000137434 (Phactr1-010) 43112133-43135383 processed_transcript
ENSMUST00000138640 (Phactr1-013) 43122872-43135359 processed_transcript
ENSMUST00000140651 (Phactr1-011) 43125888-43135249 processed_transcript
ENSMUST00000148891 (Phactr1-003) 42709581-43138526 protein_coding
ENSMUST00000149235 (Phactr1-008) 42681513-43135245 protein_coding
ENSMUST00000150620 (Phactr1-007) 43125888-43135249 processed_transcript
ENSMUST00000161201 (Phactr1-015) 43135384-43138513 processed_transcript
ENSMUSG00000085276 (Gm15812)
predicted gene 15812 		ENSMUST00000162331 (Gm15812-001) 42868338-42869226 unprocessed_pseudogene
ENSMUSG00000087202 (Gm15813)
predicted gene 15813 		ENSMUST00000142286 (Gm15813-001) 43117673-43125717 antisense
ENSMUSG00000088527 (Gm26086)
predicted gene, 26086 		ENSMUST00000157902 (Gm26086-201) 43052148-43052410 misc_RNA
ENSMUSG00000089710 (Gm15810)
predicted gene 15810 		ENSMUST00000160241 (Gm15810-001) 42782692-42788258 antisense
ENSMUSG00000090135 (Gm15809)
predicted gene 15809 		ENSMUST00000159361 (Gm15809-001) 42998511-43006067 sense_intronic

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003IC_0001ENSG00000078401ENST00000379375ENSG00000112137ENST00000332995ENST00000379350ENST00000415087ENST00000434977ENSG00000145979ENST00000343141ENST00000356436ENST00000379300ENST00000379307ENST00000422136ENST00000606214ENST00000606370ENST00000607208ENSG00000206702ENST00000383975ENSG00000212802ENST00000391491ENSG00000218893ENST00000405924ENSG00000223321ENST00000411389ENSG00000234015ENST00000457945ENSG00000272379ENST00000606393CIL_0003IC_0002ENSMUSG00000021367ENSMUST00000021796ENSMUSG00000054728ENSMUST00000066928ENSMUST00000110161ENSMUST00000123987ENSMUST00000128646ENSMUST00000131942ENSMUST00000136576ENSMUST00000137434ENSMUST00000140651ENSMUST00000148891ENSMUST00000149235ENSMUSG00000085276ENSMUST00000162331ENSMUSG00000087202ENSMUST00000142286ENSMUSG00000088527ENSMUST00000157902ENSMUSG00000089710ENSMUST00000160241ENSMUSG00000090135ENSMUST00000159361
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000078401 ENST00000379375 6.832±0.00 6.472±0.00 0.947±0.00 6.555±5.96 2.943±0.80 2.813±1.16 0.849±0.78 2.326±2.31 0.416±0.24 9.034±0.95 1.203±0.97 3.534±2.90 5.919±0.76 6.619±3.25
ENSG00000112137 ENST00000332995 N/A N/A N/A 6.692±0.00 N/A 0.714±0.08 N/A N/A N/A 3.613±0.00 0.207±0.00 1.195±0.41 1.133±0.00 1.807±0.00
ENST00000379329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379350 N/A N/A N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A 0.921±0.00 N/A N/A
ENST00000406205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415087 1.311±0.00 N/A N/A 4.367±0.00 N/A N/A 5.839±2.54 N/A N/A N/A 0.152±0.00 N/A N/A N/A
ENST00000434977 N/A N/A N/A N/A N/A N/A N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145979 ENST00000343141 N/A N/A N/A N/A N/A N/A N/A 0.671±0.00 N/A N/A N/A N/A N/A N/A
ENST00000356436 3.912±0.00 N/A N/A N/A 6.895±0.00 3.711±0.00 N/A 9.177±0.00 2.429±0.00 N/A N/A 8.176±3.27 6.788±2.39 12.253±2.76
ENST00000379291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000379300 N/A N/A N/A N/A N/A N/A N/A N/A 0.996±0.00 N/A 1.809±0.00 N/A 2.252±0.43 N/A
ENST00000379307 N/A N/A N/A N/A N/A N/A N/A N/A 2.717±0.00 N/A N/A 4.095±0.00 3.662±0.00 N/A
ENST00000416436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.067±0.00 N/A N/A N/A
ENST00000428109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606214 N/A N/A 1.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606370 N/A N/A N/A N/A 1.133±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.948±0.00
ENST00000607230 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000607658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206702 ENST00000383975 N/A N/A N/A 1.203±0.00 N/A N/A N/A N/A N/A 1.889±0.00 N/A N/A N/A 0.414±0.11
ENSG00000212802 ENST00000391491 0.064±0.00 0.034±0.00 N/A 1.127±1.01 0.583±0.55 0.463±0.27 0.490±0.00 0.280±0.24 0.240±0.18 0.319±0.22 0.030±0.00 0.970±0.65 0.447±0.25 0.081±0.02
ENSG00000218893 ENST00000405924 N/A 0.126±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.108±0.00
ENSG00000223321 ENST00000411389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.259±0.00
ENSG00000234015 ENST00000457945 N/A 0.047±0.00 N/A 0.033±0.00 N/A 0.203±0.00 0.072±0.00 0.078±0.00 0.013±0.00 0.014±0.00 N/A 0.037±0.00 0.039±0.00 0.103±0.03
ENSG00000272379 ENST00000606393 N/A 12.855±0.00 N/A 51.194±0.00 N/A N/A 26.465±0.00 7.075±0.00 N/A 14.668±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021367 ENSMUST00000021796 3.051±0.64 0.349±0.10 1.505±0.38 0.461±0.05 1.856±0.36 6.282±0.36 1.356±0.20 0.797±0.20 0.322±0.23 9.128±1.91 0.626±0.21 1.948±0.55 1.119±0.99 0.281±0.17
ENSMUSG00000054728 ENSMUST00000066928 N/A N/A N/A 67.481±0.00 N/A N/A N/A N/A N/A N/A N/A 4.754±0.00 N/A N/A
ENSMUST00000110161 N/A N/A N/A 88.489±0.00 N/A N/A N/A N/A 0.070±0.00 N/A 0.228±0.00 3.294±0.00 N/A N/A
ENSMUST00000123987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.885±35.71
ENSMUST00000127859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128646 N/A N/A N/A 10.304±9.44 N/A N/A N/A N/A 0.095±0.00 2.415±0.29 N/A N/A N/A N/A
ENSMUST00000131942 N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A N/A N/A 0.194±0.00 1.732±0.00 N/A N/A
ENSMUST00000132050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136576 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A 100.358±57.38 N/A
ENSMUST00000136951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 51.504±9.85 N/A
ENSMUST00000138640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.737±24.25
ENSMUST00000148891 N/A 0.783±0.36 0.911±0.00 7.596±3.90 0.152±0.00 0.484±0.28 0.469±0.00 N/A 0.073±0.05 10.573±4.70 0.275±0.08 1.357±0.66 3.714±2.17 1.110±0.07
ENSMUST00000149235 N/A N/A N/A 57.845±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150620 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085276 ENSMUST00000162331 0.053±0.02 0.133±0.03 0.021±0.00 0.114±0.07 0.041±0.00 0.117±0.04 0.030±0.00 0.053±0.03 0.094±0.04 0.088±0.04 N/A 0.405±0.02 N/A 0.049±0.03
ENSMUSG00000087202 ENSMUST00000142286 0.071±0.04 N/A 0.014±0.00 0.147±0.06 0.037±0.01 0.064±0.00 0.011±0.00 0.030±0.01 N/A 0.124±0.03 0.016±0.00 0.066±0.03 0.050±0.03 6.101±2.16
ENSMUSG00000088527 ENSMUST00000157902 N/A N/A N/A 0.174±0.00 N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A N/A N/A
ENSMUSG00000089710 ENSMUST00000160241 0.087±0.00 N/A N/A N/A 0.068±0.00 N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A 0.116±0.05
ENSMUSG00000090135 ENSMUST00000159361 N/A N/A 0.037±0.01 0.071±0.02 N/A N/A N/A 0.111±0.00 N/A 0.161±0.00 N/A N/A 0.011±0.00 N/A

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