C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MAM domain containing glycosylphosphatidylinositol anchor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112139 MDGA1 9606 - 6:37630679-37699306 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373401 MDGA1-005 37633737-37639824 retained_intron
  ENST00000418178 MDGA1-012 37638655-37646374 protein_coding
  ENST00000434837 MDGA1-001 37630679-37697990 protein_coding
  ENST00000478143 MDGA1-002 37649871-37663989 retained_intron
  ENST00000502298 MDGA1-010 37643278-37647272 nonsense_mediated_decay
  ENST00000503419 MDGA1-011 37638628-37641897 processed_transcript
  ENST00000505425 MDGA1-003 37637960-37696811 protein_coding
  ENST00000508399 MDGA1-008 37655880-37664316 protein_coding
  ENST00000510077 MDGA1-009 37646303-37648630 processed_transcript
  ENST00000515437 MDGA1-007 37655723-37699306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373401ENST00000418178ENST00000434837ENST00000478143ENST00000502298ENST00000505425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373401 0.119±0.00 N/A N/A N/A N/A 0.045±0.00 0.106±0.00 N/A N/A 0.192±0.00 N/A 0.306±0.08 0.039±0.00 0.236±0.00
ENST00000418178 N/A N/A 2.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434837 0.141±0.00 0.323±0.00 0.022±0.00 0.517±0.34 0.193±0.02 0.625±0.00 0.073±0.00 0.096±0.00 N/A 0.192±0.00 N/A 0.496±0.52 0.063±0.01 0.320±0.22
ENST00000478143 N/A N/A 0.297±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000502298 N/A N/A N/A N/A N/A N/A N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A
ENST00000505425 N/A 0.534±0.00 N/A 0.255±0.00 0.255±0.01 0.425±0.33 0.260±0.17 0.322±0.00 N/A 0.460±0.14 0.245±0.01 1.644±0.99 0.263±0.07 0.612±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D2 CIL_0005D2_0001 CGP 6:37482920-37699306
CIL_0004LC CIL_0004LC_0002 CGP 6:37630679-38154624

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001764 ISS neuron migration
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0007420 ISS brain development
GO:0016020 IEA membrane
GO:0021527 ISS spinal cord association neuron differentiation
GO:0021799 IEA cerebral cortex radially oriented cell migration
GO:0046658 ISS anchored component of plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074376 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 protein_coding Danio_rerio
ENSMUSG00000043557 Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 protein_coding Mus_musculus

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