C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MAM domain containing glycosylphosphatidylinositol anchor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434837 MDGA1-001 ENSG00000112139 9606 - 6:37630679-37697990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000434837
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000434837 0.141±0.00 0.323±0.00 0.022±0.00 0.517±0.34 0.193±0.02 0.625±0.00 0.073±0.00 0.096±0.00 0.192±0.00 0.496±0.52 0.063±0.01 0.320±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D2 CIL_0005D2_0001 CGP 6:37482920-37699306
CIL_0004LC CIL_0004LC_0002 CGP 6:37630679-38154624

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 ISS neuron migration
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0007420 ISS brain development
GO:0016020 IEA membrane
GO:0021527 ISS spinal cord association neuron differentiation
GO:0021799 IEA cerebral cortex radially oriented cell migration
GO:0046658 ISS anchored component of plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171691 Mdga1-001 protein_coding Mus_musculus 0 4855
ENSMUST00000073556 Mdga1-201 protein_coding Mus_musculus 0 4170
ENSMUST00000167190 Mdga1-003 protein_coding Mus_musculus 0 2588
ENSMUST00000165528 Mdga1-004 retained_intron Mus_musculus 0 1445
ENSMUST00000165211 Mdga1-006 protein_coding Mus_musculus 0 771
ENSMUST00000168044 Mdga1-007 protein_coding Mus_musculus 0 708
ENSMUST00000170786 Mdga1-008 processed_transcript Mus_musculus 0 494

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