C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: single-minded family bHLH transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112246 SIM1 9606 - 6:100385015-100464929 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262901 SIM1-201 100388872-100463677 protein_coding
  ENST00000369208 SIM1-001 100385015-100464929 protein_coding
  ENST00000505753 SIM1-003 100391083-100394042 retained_intron
  ENST00000511871 SIM1-002 100462603-100464889 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000262901ENST00000369208ENST00000511871
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000262901 N/A N/A N/A N/A 0.003±0.00 N/A 0.050±0.00 N/A N/A 0.843±0.00 0.013±0.00 0.093±0.00
ENST00000369208 0.920±0.00 0.001±0.00 4.206±0.00 0.266±0.00 N/A 0.002±0.00 1.009±0.97 0.050±0.03 0.006±0.00 1.056±0.77 0.013±0.01 N/A
ENST00000511871 N/A N/A 4.896±0.00 N/A N/A N/A N/A N/A N/A 0.714±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NG CIL_0007NG_0001 UCNEbase 6:99749802-100612540
CIL_0008SA CIL_0008SA_0001 VISTA 6:99910036-100511515
CIL_00097X CIL_00097X_0001 VISTA 6:100156252-100757191
CIL_0008V6 CIL_0008V6_0001 VISTA 6:100225935-100826717

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0007399 IEA nervous system development
GO:0030154 IEA cell differentiation
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013789 sim1b single-minded homolog 1b (Drosophila) protein_coding Danio_rerio
ENSDARG00000023316 sim1a single-minded homolog 1a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000019913 Sim1 single-minded homolog 1 (Drosophila) protein_coding Mus_musculus

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