C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs576 VISTA 9606 6:99910036-100511515
GeneTranscriptPositionBiotype
ENSG00000112246 (SIM1)
single-minded family bHLH transcription factor 1 		ENST00000262901 (SIM1-201) 100388872-100463677 protein_coding
ENST00000369208 (SIM1-001) 100385015-100464929 protein_coding
ENST00000505753 (SIM1-003) 100391083-100394042 retained_intron
ENST00000511871 (SIM1-002) 100462603-100464889 retained_intron
ENSG00000112249 (ASCC3)
activating signal cointegrator 1 complex subunit 3 		ENST00000324696 (ASCC3-003) 100647288-100881372 nonsense_mediated_decay
ENST00000324723 (ASCC3-006) 100848420-100881348 protein_coding
ENST00000369143 (ASCC3-002) 100856303-100881311 protein_coding
ENST00000369162 (ASCC3-001) 100508194-100881364 protein_coding
ENST00000468245 (ASCC3-005) 100848004-100881301 retained_intron
ENST00000518006 (ASCC3-007) 100509218-100510308 retained_intron
ENST00000522650 (ASCC3-004) 100715130-100881364 protein_coding
ENSG00000152034 (MCHR2)
melanin-concentrating hormone receptor 2 		ENST00000281806 (MCHR2-201) 99919910-99994223 protein_coding
ENST00000369212 (MCHR2-001) 99920752-99994247 protein_coding
ENSG00000213177 (PRDX2P4)
peroxiredoxin 2 pseudogene 4 		ENST00000447134 (PRDX2P4-001) 100136064-100136663 processed_pseudogene
ENSG00000219257 (NPM1P38)
nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 38 		ENST00000403835 (NPM1P38-001) 100050372-100051236 processed_pseudogene
ENSG00000228082 (RP1-121G13.2)
 ENST00000411442 (RP1-121G13.2-001) 100427118-100437484 antisense
ENSG00000229315 (MCHR2-AS1)
MCHR2 antisense RNA 1 		ENST00000430122 (MCHR2-AS1-002) 99994056-100076413 antisense
ENST00000443234 (MCHR2-AS1-003) 99993944-100076411 antisense
ENST00000451220 (MCHR2-AS1-001) 100000940-100076406 antisense
ENST00000452482 (MCHR2-AS1-004) 99994066-100026384 antisense
ENSG00000275716 (RP3-344J20.3)
 ENST00000612765 (RP3-344J20.3-001) 100093311-100093768 processed_pseudogene
CIL_0008SA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs576 VISTA 10090 10:50957066-51558554
GeneTranscriptPositionBiotype
ENSMUSG00000019913 (Sim1)
single-minded homolog 1 (Drosophila) 		ENSMUST00000020071 (Sim1-201) 50895651-50989152 protein_coding
ENSMUSG00000062593 (Lilrb4)
leukocyte immunoglobulin-like receptor, subfamily B, member 4 		ENSMUST00000078778 (Lilrb4-201) 51491018-51496613 protein_coding
ENSMUST00000105481 (Lilrb4-001) 51480640-51496597 protein_coding
ENSMUST00000105482 (Lilrb4-002) 51480640-51496613 protein_coding
ENSMUSG00000089672 (Gp49a)
glycoprotein 49 A 		ENSMUST00000102894 (Gp49a-001) 51480632-51486316 protein_coding
ENSMUST00000139982 (Gp49a-002) 51480678-51485748 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SA_0001ENSG00000112246ENST00000262901ENST00000369208ENST00000505753ENST00000511871ENSG00000112249ENST00000324696ENST00000324723ENST00000369143ENST00000369162ENST00000468245ENST00000518006ENST00000522650ENSG00000152034ENST00000281806ENST00000369212ENSG00000213177ENST00000447134ENSG00000219257ENST00000403835ENSG00000228082ENST00000411442ENSG00000229315ENST00000430122ENST00000443234ENST00000451220ENST00000452482ENSG00000275716ENST00000612765CIL_0008SA_0002ENSMUSG00000019913ENSMUST00000020071ENSMUSG00000062593ENSMUST00000078778ENSMUST00000105481ENSMUST00000105482ENSMUSG00000089672ENSMUST00000102894ENSMUST00000139982
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SA_0001ENSG00000112246ENST00000262901ENST00000369208ENST00000511871ENSG00000112249ENST00000324696ENST00000369143ENST00000369162ENST00000468245ENSG00000152034ENST00000281806ENST00000369212ENSG00000213177ENST00000447134ENSG00000219257ENST00000403835ENSG00000228082ENST00000411442ENSG00000229315ENST00000430122ENST00000451220ENST00000452482ENSG00000275716ENST00000612765CIL_0008SA_0002ENSMUSG00000019913ENSMUST00000020071ENSMUSG00000062593ENSMUST00000078778ENSMUST00000105481ENSMUST00000105482ENSMUSG00000089672ENSMUST00000102894ENSMUST00000139982
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112246 ENST00000262901 N/A N/A N/A N/A N/A 0.003±0.00 N/A 0.050±0.00 N/A N/A 0.843±0.00 N/A 0.013±0.00 0.093±0.00
ENST00000369208 0.920±0.00 0.001±0.00 4.206±0.00 N/A 0.266±0.00 N/A 0.002±0.00 1.009±0.97 0.050±0.03 0.006±0.00 1.056±0.77 N/A 0.013±0.01 N/A
ENST00000505753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511871 N/A N/A 4.896±0.00 N/A N/A N/A N/A N/A N/A N/A 0.714±0.00 N/A N/A N/A
ENSG00000112249 ENST00000324696 N/A N/A N/A N/A N/A N/A N/A N/A 2.536±0.00 N/A N/A N/A N/A N/A
ENST00000324723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369143 0.466±0.00 1.113±0.00 0.648±0.00 0.494±0.00 0.939±0.41 N/A N/A N/A 0.487±0.00 N/A N/A 0.974±0.37 1.899±0.00 2.600±0.00
ENST00000369162 2.133±0.00 0.503±0.00 0.331±0.00 1.455±0.00 1.357±0.50 2.725±0.00 1.018±0.34 2.059±1.49 3.742±0.00 2.477±2.03 0.714±0.00 1.589±0.77 3.617±2.11 3.733±2.47
ENST00000468245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.962±0.00 N/A N/A N/A
ENST00000518006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152034 ENST00000281806 N/A 0.005±0.00 N/A 0.553±0.10 0.010±0.00 0.005±0.00 N/A 0.010±0.00 N/A N/A N/A 0.008±0.00 N/A N/A
ENST00000369212 N/A N/A N/A 0.872±0.00 0.090±0.06 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A N/A
ENSG00000213177 ENST00000447134 N/A N/A N/A 0.051±0.00 N/A 0.041±0.00 N/A N/A N/A N/A 0.038±0.00 0.055±0.00 N/A N/A
ENSG00000219257 ENST00000403835 N/A 0.038±0.00 N/A N/A N/A 0.035±0.00 N/A N/A N/A 0.012±0.00 0.011±0.00 N/A N/A 0.150±0.03
ENSG00000228082 ENST00000411442 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.310±0.10
ENSG00000229315 ENST00000430122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 33.568±8.13
ENST00000443234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451220 N/A N/A N/A N/A N/A N/A 1.177±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000452482 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.324±0.53
ENSG00000275716 ENST00000612765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 0.042±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019913 ENSMUST00000020071 0.006±0.00 N/A N/A 0.307±0.19 0.061±0.03 0.015±0.00 N/A 1.470±0.25 0.002±0.00 0.080±0.00 0.074±0.04 0.053±0.04 0.008±0.01 0.035±0.02
ENSMUSG00000062593 ENSMUST00000078778 N/A N/A 3.869±0.00 0.206±0.00 N/A N/A 0.580±0.00 N/A 1.829±0.00 N/A 0.317±0.10 2.072±0.00 0.729±0.41 N/A
ENSMUST00000105481 3.683±0.62 1.103±0.00 3.343±1.93 0.085±0.00 4.863±1.69 0.778±0.00 0.902±0.22 0.709±0.44 2.089±1.70 5.312±1.46 0.148±0.00 1.992±0.47 0.818±0.58 0.051±0.00
ENSMUST00000105482 N/A 2.449±0.66 N/A 0.020±0.00 2.452±0.00 0.530±0.12 N/A 0.313±0.05 0.407±0.08 N/A 0.161±0.00 2.880±0.41 N/A 0.105±0.02
ENSMUSG00000089672 ENSMUST00000102894 1.575±0.07 1.234±0.40 3.179±0.00 0.062±0.00 2.399±0.57 0.774±0.16 0.777±0.04 0.335±0.03 N/A 3.143±0.36 0.211±0.10 1.085±0.56 0.471±0.29 0.168±0.00
ENSMUST00000139982 1.969±0.00 0.936±0.18 4.201±0.28 0.070±0.01 N/A 0.314±0.00 0.890±0.00 0.411±0.05 1.546±1.60 N/A 0.133±0.02 3.364±0.28 0.709±0.78 0.177±0.05

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