C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112511 PHF1 9606 + 6:33410399-33416453 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374512 PHF1-001 33410961-33416453 protein_coding
  ENST00000374516 PHF1-002 33410961-33416453 protein_coding
  ENST00000427004 PHF1-005 33410399-33413294 protein_coding
  ENST00000427826 PHF1-011 33415065-33416414 nonsense_mediated_decay
  ENST00000428274 PHF1-006 33410751-33413831 protein_coding
  ENST00000459809 PHF1-007 33410758-33412779 nonsense_mediated_decay
  ENST00000479029 PHF1-010 33415241-33416312 retained_intron
  ENST00000486845 PHF1-009 33414336-33416213 retained_intron
  ENST00000487667 PHF1-004 33410690-33415871 nonsense_mediated_decay
  ENST00000488767 PHF1-008 33412984-33413944 retained_intron
  ENST00000495509 PHF1-012 33411126-33416051 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374512ENST00000374516ENST00000427826ENST00000428274ENST00000495509
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374512 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A
ENST00000374516 13.010±0.00 14.175±0.00 1.917±0.00 3.825±0.00 6.651±4.72 6.795±6.21 4.971±3.99 16.548±0.00 3.859±1.74 30.967±0.00 14.823±0.00 28.431±16.67 15.571±3.03 26.584±0.00
ENST00000427826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.696±0.00 N/A N/A 90.101±0.00
ENST00000428274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.813±0.00 11.235±0.00 73.972±0.00
ENST00000495509 15.691±0.00 18.718±0.00 N/A 17.656±0.00 N/A 13.149±11.97 13.547±0.00 1.649±0.00 N/A 38.451±0.00 13.202±11.99 42.042±0.00 N/A 38.243±12.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000425 CIL_000425_0001 CGP 6:33391536-33416453
CIL_000252 CIL_000252_0001 CGP 6:33410399-33418317

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035098 IDA ESC/E(Z) complex
GO:0035861 IDA site of double-strand break
GO:0061086 IMP negative regulation of histone H3-K27 methylation
GO:0061087 IMP positive regulation of histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057439 PHF1 PHD finger protein 1 protein_coding Danio_rerio
ENSMUSG00000024193 Phf1 PHD finger protein 1 protein_coding Mus_musculus

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