C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374516 PHF1-002 ENSG00000112511 9606 + 6:33410961-33416453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374516 13.010±0.00 14.175±0.00 1.917±0.00 3.825±0.00 6.651±4.72 6.795±6.21 4.971±3.99 16.548±0.00 3.859±1.74 30.967±0.00 14.823±0.00 28.431±16.67 15.571±3.03 26.584±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000425 CIL_000425_0001 CGP 6:33391536-33416453
CIL_000252 CIL_000252_0001 CGP 6:33410399-33418317

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016568 IEA chromatin modification
GO:0035064 IDA methylated histone binding
GO:0035098 IDA ESC/E(Z) complex
GO:0035861 IDA site of double-strand break
GO:0061086 IMP negative regulation of histone H3-K27 methylation
GO:0061087 IMP positive regulation of histone H3-K27 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073724 Phf1-201 protein_coding Mus_musculus 0 2595

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