C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000252_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000112511-ENSG00000112514 CGP 9606 6:33410399-33418317
GeneTranscriptPositionBiotype
ENSG00000112511 (PHF1)
PHD finger protein 1 		ENST00000374512 (PHF1-001) 33410961-33416453 protein_coding
ENST00000374516 (PHF1-002) 33410961-33416453 protein_coding
ENST00000427004 (PHF1-005) 33410399-33413294 protein_coding
ENST00000427826 (PHF1-011) 33415065-33416414 nonsense_mediated_decay
ENST00000428274 (PHF1-006) 33410751-33413831 protein_coding
ENST00000459809 (PHF1-007) 33410758-33412779 nonsense_mediated_decay
ENST00000479029 (PHF1-010) 33415241-33416312 retained_intron
ENST00000486845 (PHF1-009) 33414336-33416213 retained_intron
ENST00000487667 (PHF1-004) 33410690-33415871 nonsense_mediated_decay
ENST00000488767 (PHF1-008) 33412984-33413944 retained_intron
ENST00000495509 (PHF1-012) 33411126-33416051 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_000252_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024193-ENSMUSG00000024194 CGP 10090 17:26933127-26939478
GeneTranscriptPositionBiotype
ENSMUSG00000024193 (Phf1)
PHD finger protein 1 		ENSMUST00000073724 (Phf1-201) 26933127-26937890 protein_coding
ENSMUSG00000024194 (Cuta)
cutA divalent cation tolerance homolog (E. coli) 		ENSMUST00000025027 (Cuta-201) 26937973-26939468 protein_coding
ENSMUST00000114935 (Cuta-202) 26937973-26939478 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000252_0001ENSG00000112511ENST00000374512ENST00000374516ENST00000427004ENST00000427826ENST00000428274ENST00000459809ENST00000479029ENST00000486845ENST00000487667ENST00000488767ENST00000495509CIL_000252_0002ENSMUSG00000024193ENSMUST00000073724ENSMUSG00000024194ENSMUST00000025027ENSMUST00000114935
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000252_0001ENSG00000112511ENST00000374512ENST00000374516ENST00000427826ENST00000428274ENST00000495509CIL_000252_0002ENSMUSG00000024193ENSMUST00000073724ENSMUSG00000024194ENSMUST00000025027ENSMUST00000114935
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112511 ENST00000374512 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.263±0.00 N/A N/A N/A N/A
ENST00000374516 13.010±0.00 14.175±0.00 1.917±0.00 3.825±0.00 6.651±4.72 6.795±6.21 4.971±3.99 16.548±0.00 3.859±1.74 30.967±0.00 14.823±0.00 28.431±16.67 15.571±3.03 26.584±0.00
ENST00000427004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.696±0.00 N/A N/A 90.101±0.00
ENST00000428274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.813±0.00 11.235±0.00 73.972±0.00
ENST00000459809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495509 15.691±0.00 18.718±0.00 N/A 17.656±0.00 N/A 13.149±11.97 13.547±0.00 1.649±0.00 N/A 38.451±0.00 13.202±11.99 42.042±0.00 N/A 38.243±12.33
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024193 ENSMUST00000073724 17.872±0.30 53.673±10.86 29.662±4.23 16.613±6.83 34.974±17.29 26.492±1.86 12.512±1.88 18.141±3.22 8.141±2.22 42.454±5.45 5.409±1.32 27.857±7.90 5.969±0.57 42.765±16.42
ENSMUSG00000024194 ENSMUST00000025027 31.041±4.08 65.208±29.17 40.497±3.67 13.448±8.91 43.756±10.58 34.096±4.37 17.258±1.53 34.319±5.18 28.166±5.42 38.900±8.13 15.565±3.59 25.276±10.63 28.997±12.35 8.100±1.30
ENSMUST00000114935 9.546±0.57 N/A 22.726±0.11 16.212±4.49 19.583±7.74 10.828±0.00 14.981±3.53 10.099±2.16 10.054±2.12 8.220±0.06 33.686±3.74 17.148±8.27 22.228±19.08 3.484±1.20

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