C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113595 TRIM23 9606 - 5:65589680-65625975 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000231524 TRIM23-001 65589680-65624646 protein_coding
  ENST00000274327 TRIM23-002 65590176-65624299 protein_coding
  ENST00000381018 TRIM23-003 65590176-65624296 protein_coding
  ENST00000505205 TRIM23-005 65611670-65624360 nonsense_mediated_decay
  ENST00000506400 TRIM23-006 65610862-65624320 nonsense_mediated_decay
  ENST00000508808 TRIM23-007 65606916-65610874 processed_transcript
  ENST00000513794 TRIM23-004 65618232-65625975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000231524ENST00000274327ENST00000381018
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000231524 1.788±0.00 N/A 7.956±1.24 1.279±0.28 2.188±1.48 1.542±0.73 1.564±1.18 0.979±0.35 1.656±0.50 2.066±0.97 1.860±0.14 0.809±0.16 5.306±0.00
ENST00000274327 1.119±0.00 1.118±0.00 N/A 0.783±0.00 0.755±0.00 0.838±0.00 N/A N/A 1.692±0.00 N/A 1.135±0.82 N/A N/A
ENST00000381018 N/A N/A 6.869±1.09 N/A 1.045±0.00 1.396±0.23 1.017±0.00 3.480±0.00 N/A 1.478±0.00 0.883±0.40 2.003±0.00 6.451±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G9 CIL_0007G9_0002 CGP 5:65563236-65625975

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0003924 IDA:IEA GTPase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008047 TAS enzyme activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019001 IEA guanyl nucleotide binding
GO:0019003 IDA GDP binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0042802 IPI identical protein binding
GO:0043085 TAS positive regulation of catalytic activity
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069420 trim23 tripartite motif containing 23 protein_coding Danio_rerio
ENSMUSG00000021712 Trim23 tripartite motif-containing 23 protein_coding Mus_musculus

Loading