C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274327 TRIM23-002 ENSG00000113595 9606 - 5:65590176-65624299 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLungOvaryENST00000274327
Transcript ID Adipose Bladder Breast Colon Heart Lung Ovary
ENST00000274327 1.119±0.00 1.118±0.00 0.783±0.00 0.755±0.00 0.838±0.00 1.692±0.00 1.135±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007G9 CIL_0007G9_0002 CGP 5:65563236-65625975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0003924 IDA:IEA GTPase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IPI:IEA protein binding
GO:0005525 IDA:IEA GTP binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005765 IDA lysosomal membrane
GO:0006184 TAS GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008047 TAS enzyme activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0019001 IEA guanyl nucleotide binding
GO:0019003 IDA GDP binding
GO:0031683 IEA G-protein beta/gamma-subunit complex binding
GO:0042802 IPI identical protein binding
GO:0043085 TAS positive regulation of catalytic activity
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022225 Trim23-001 protein_coding Mus_musculus 0 2250
ENSMUST00000069174 Trim23-004 protein_coding Mus_musculus 0 2141
ENSMUST00000069187 Trim23-002 protein_coding Mus_musculus 0 1062
ENSDART00000127581 trim23-001 protein_coding Danio_rerio 0 747
ENSDART00000101032 trim23-201 protein_coding Danio_rerio 0 580
ENSMUST00000160230 Trim23-003 nonsense_mediated_decay Mus_musculus 0 316

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