C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394421 TCERG1-007 ENSG00000113649 9606 + 5:146447332-146511023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394421 2.352±0.00 4.753±0.00 0.940±0.00 5.530±0.00 4.091±0.27 2.960±0.00 1.160±0.77 1.832±1.22 1.742±1.21 3.169±0.64 0.613±0.00 4.346±2.09 3.071±1.57 7.808±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0001 CGP 5:146339024-146511961
CIL_0001AD CIL_0001AD_0001 CGP 5:146447311-146516190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025375 Tcerg1-001 protein_coding Mus_musculus 0 3387
ENSMUST00000173642 Tcerg1-002 nonsense_mediated_decay Mus_musculus 0 2702
ENSMUST00000024831 Tff1-001 protein_coding Mus_musculus 0.0000006 58

Loading