C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation regulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296702 TCERG1-001 ENSG00000113649 9606 + 5:146447312-146511961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000296702
Transcript ID Adrenal Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000296702 1.724±0.00 3.196±0.00 1.282±0.00 0.727±0.00 1.045±0.00 0.804±0.00 3.016±0.54 2.781±0.00 1.250±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001AK CIL_0001AK_0001 CGP 5:146339024-146511961
CIL_0001AD CIL_0001AD_0001 CGP 5:146447311-146516190

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001106 IDA RNA polymerase II transcription corepressor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0044822 IDA poly(A) RNA binding
GO:0070064 IEA proline-rich region binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025375 Tcerg1-001 protein_coding Mus_musculus 0 5415
ENSMUST00000173642 Tcerg1-002 nonsense_mediated_decay Mus_musculus 0 4283
ENSMUST00000024831 Tff1-001 protein_coding Mus_musculus 0.0000006 58

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