C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113742 CPEB4 9606 + 5:173888280-173961976 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265085 CPEB4-001 173888280-173961976 protein_coding
  ENST00000334035 CPEB4-002 173889340-173960309 protein_coding
  ENST00000517880 CPEB4-006 173893078-173956457 protein_coding
  ENST00000518141 CPEB4-009 173890666-173891607 processed_transcript
  ENST00000519152 CPEB4-008 173890677-173945092 protein_coding
  ENST00000519467 CPEB4-010 173918216-173956514 processed_transcript
  ENST00000519835 CPEB4-004 173889531-173953439 protein_coding
  ENST00000520867 CPEB4-003 173889340-173956235 protein_coding
  ENST00000522336 CPEB4-005 173893051-173956514 protein_coding
  ENST00000522344 CPEB4-007 173890674-173910818 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265085ENST00000334035ENST00000520867
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265085 N/A N/A N/A N/A 4.266±0.00 N/A N/A N/A N/A 0.328±0.01 0.280±0.00 N/A
ENST00000334035 14.066±0.00 11.815±0.00 2.969±2.27 2.236±1.76 6.362±1.46 3.576±1.32 4.706±3.16 4.247±3.06 7.294±4.78 2.667±1.25 2.498±0.31 2.786±0.00
ENST00000520867 N/A N/A N/A N/A 11.375±5.61 N/A N/A N/A 8.242±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DQ CIL_0002DQ_0001 CGP 5:173607514-173961976
CIL_0002DR CIL_0002DR_0001 CGP 5:173888280-174006140

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002931 ISS response to ischemia
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0014069 ISS postsynaptic density
GO:0030425 ISS dendrite
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0036294 ISS cellular response to decreased oxygen levels
GO:0042149 ISS cellular response to glucose starvation
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0045202 IEA synapse
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074474 cytoplasmic polyadenylation element binding protein 4 protein_coding Danio_rerio
ENSMUSG00000020300 Cpeb4 cytoplasmic polyadenylation element binding protein 4 protein_coding Mus_musculus

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