C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoplasmic polyadenylation element binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334035 CPEB4-002 ENSG00000113742 9606 + 5:173889340-173960309 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334035
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334035 14.066±0.00 11.815±0.00 2.969±2.27 2.236±1.76 6.362±1.46 3.576±1.32 4.706±3.16 4.247±3.06 7.294±4.78 2.667±1.25 2.498±0.31 2.786±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DQ CIL_0002DQ_0001 CGP 5:173607514-173961976
CIL_0002DR CIL_0002DR_0001 CGP 5:173888280-174006140

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002931 ISS response to ischemia
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005783 ISS endoplasmic reticulum
GO:0014069 ISS postsynaptic density
GO:0030425 ISS dendrite
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0036294 ISS cellular response to decreased oxygen levels
GO:0042149 ISS cellular response to glucose starvation
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0044822 IDA poly(A) RNA binding
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109412 Cpeb4-001 protein_coding Mus_musculus 0 8141
ENSMUST00000155278 Cpeb4-002 protein_coding Mus_musculus 0 6316
ENSMUST00000020543 Cpeb4-201 protein_coding Mus_musculus 0 1788
ENSDART00000127580 CPEB4-201 protein_coding Danio_rerio 0 398

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