C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic polyadenylation element binding protein 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020300 Cpeb4 10090 + 11:31872211-31935634 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020543 Cpeb4-201 31872211-31931577 protein_coding
  ENSMUST00000109412 Cpeb4-001 31872226-31935634 protein_coding
  ENSMUST00000155278 Cpeb4-002 31873275-31935634 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020543ENSMUST00000109412ENSMUST00000155278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020543 2.640±0.85 2.951±1.23 N/A N/A 1.649±0.38 3.146±1.23 2.249±0.00 4.620±1.91 3.049±0.00 3.756±1.87 N/A 1.760±0.88 N/A 9.408±3.44
ENSMUST00000109412 3.603±1.74 5.634±1.34 1.793±0.13 5.356±3.53 3.579±0.62 4.365±1.81 4.515±0.87 8.116±3.22 8.080±5.75 5.985±0.84 N/A 2.116±0.61 2.789±0.03 0.997±0.00
ENSMUST00000155278 1.502±0.34 N/A 4.228±0.69 2.960±0.51 1.265±0.00 1.231±0.16 1.803±0.30 2.961±0.49 6.481±4.08 3.502±0.11 7.341±1.94 1.314±0.76 3.156±2.58 5.650±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DQ CIL_0002DQ_0002 CGP 11:31665181-31935634
CIL_0002DR CIL_0002DR_0002 CGP 11:31872211-31979651

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0002931 IDA response to ischemia
GO:0003723 IDA RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0014069 IDA postsynaptic density
GO:0030425 IDA dendrite
GO:0035235 ISS ionotropic glutamate receptor signaling pathway
GO:0036294 ISS cellular response to decreased oxygen levels
GO:0042149 ISS cellular response to glucose starvation
GO:0043524 ISS negative regulation of neuron apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045202 IDA synapse
GO:0071230 ISS cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074474 cytoplasmic polyadenylation element binding protein 4 protein_coding Danio_rerio
ENSG00000113742 CPEB4 cytoplasmic polyadenylation element binding protein 4 protein_coding Homo_sapiens

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