C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002DQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145919-ENSG00000113742 CGP 9606 5:173607514-173961976
GeneTranscriptPositionBiotype
ENSG00000113742 (CPEB4)
cytoplasmic polyadenylation element binding protein 4 		ENST00000265085 (CPEB4-001) 173888280-173961976 protein_coding
ENST00000334035 (CPEB4-002) 173889340-173960309 protein_coding
ENST00000517880 (CPEB4-006) 173893078-173956457 protein_coding
ENST00000518141 (CPEB4-009) 173890666-173891607 processed_transcript
ENST00000519152 (CPEB4-008) 173890677-173945092 protein_coding
ENST00000519467 (CPEB4-010) 173918216-173956514 processed_transcript
ENST00000519835 (CPEB4-004) 173889531-173953439 protein_coding
ENST00000520867 (CPEB4-003) 173889340-173956235 protein_coding
ENST00000522336 (CPEB4-005) 173893051-173956514 protein_coding
ENST00000522344 (CPEB4-007) 173890674-173910818 retained_intron
ENSG00000145919 (BOD1)
biorientation of chromosomes in cell division 1 		ENST00000285908 (BOD1-002) 173607521-173616588 protein_coding
ENST00000311086 (BOD1-001) 173607514-173616660 protein_coding
ENST00000462674 (BOD1-003) 173609357-173614852 protein_coding
ENST00000471339 (BOD1-004) 173609568-173616659 processed_transcript
ENST00000477985 (BOD1-006) 173607799-173616358 protein_coding
ENST00000480951 (BOD1-005) 173607933-173616653 protein_coding
ENST00000518658 (BOD1-007) 173608060-173609740 retained_intron
ENSG00000253428 (CTB-43E15.2)
 ENST00000521373 (CTB-43E15.2-001) 173689459-173705849 lincRNA
ENSG00000253686 (LINC01484)
long intergenic non-protein coding RNA 1484 		ENST00000517733 (LINC01484-002) 173707614-173746209 lincRNA
ENST00000518902 (LINC01484-003) 173719246-173746211 lincRNA
ENST00000521128 (LINC01484-001) 173710440-173719692 lincRNA
ENSG00000253959 (CTB-43E15.1)
 ENST00000523242 (CTB-43E15.1-001) 173642519-173658194 lincRNA
ENSG00000254211 (LINC01485)
long intergenic non-protein coding RNA 1485 		ENST00000518675 (LINC01485-002) 173790809-173809039 lincRNA
ENST00000520324 (LINC01485-005) 173786790-173788413 lincRNA
ENST00000522571 (LINC01485-001) 173790459-173807881 lincRNA
ENST00000522731 (LINC01485-004) 173789275-173790942 lincRNA
ENST00000523617 (LINC01485-003) 173786928-173790925 lincRNA
CIL_0002DQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000044502-ENSMUSG00000020300 CGP 10090 11:31665181-31935634
GeneTranscriptPositionBiotype
ENSMUSG00000020300 (Cpeb4)
cytoplasmic polyadenylation element binding protein 4 		ENSMUST00000020543 (Cpeb4-201) 31872211-31931577 protein_coding
ENSMUST00000109412 (Cpeb4-001) 31872226-31935634 protein_coding
ENSMUST00000155278 (Cpeb4-002) 31873275-31935634 protein_coding
ENSMUSG00000044502 (Bod1)
biorientation of chromosomes in cell division 1 		ENSMUST00000058060 (Bod1-001) 31665181-31671885 protein_coding
ENSMUST00000109415 (Bod1-002) 31666487-31671727 protein_coding
ENSMUSG00000085772 (D630024D03Rik)
RIKEN cDNA D630024D03 gene 		ENSMUST00000126265 (D630024D03Rik-003) 31818110-31824473 lincRNA
ENSMUST00000129425 (D630024D03Rik-002) 31790113-31824473 lincRNA
ENSMUST00000134944 (D630024D03Rik-001) 31800688-31824524 lincRNA
ENSMUSG00000086335 (Gm12107)
predicted gene 12107 		ENSMUST00000132857 (Gm12107-001) 31832660-31838214 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DQ_0001ENSG00000113742ENST00000265085ENST00000334035ENST00000517880ENST00000518141ENST00000519152ENST00000519467ENST00000519835ENST00000520867ENST00000522336ENST00000522344ENSG00000145919ENST00000285908ENST00000311086ENST00000462674ENST00000471339ENST00000477985ENST00000480951ENST00000518658ENSG00000253428ENST00000521373ENSG00000253686ENST00000517733ENST00000518902ENST00000521128ENSG00000253959ENST00000523242ENSG00000254211ENST00000518675ENST00000520324ENST00000522571ENST00000522731ENST00000523617CIL_0002DQ_0002ENSMUSG00000020300ENSMUST00000020543ENSMUST00000109412ENSMUST00000155278ENSMUSG00000044502ENSMUST00000058060ENSMUST00000109415ENSMUSG00000085772ENSMUST00000126265ENSMUST00000129425ENSMUST00000134944ENSMUSG00000086335ENSMUST00000132857
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002DQ_0001ENSG00000113742ENST00000265085ENST00000334035ENST00000520867ENSG00000145919ENST00000285908ENST00000311086ENST00000462674ENST00000471339ENST00000477985ENST00000480951ENST00000518658ENSG00000253428ENST00000521373ENSG00000253686ENST00000517733ENST00000518902ENST00000521128ENSG00000253959ENST00000523242ENSG00000254211ENST00000518675ENST00000520324ENST00000522571ENST00000522731ENST00000523617CIL_0002DQ_0002ENSMUSG00000020300ENSMUST00000020543ENSMUST00000109412ENSMUST00000155278ENSMUSG00000044502ENSMUST00000058060ENSMUST00000109415ENSMUSG00000085772ENSMUST00000126265ENSMUST00000129425ENSMUST00000134944ENSMUSG00000086335ENSMUST00000132857
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113742 ENST00000265085 N/A N/A N/A N/A N/A N/A 4.266±0.00 N/A N/A N/A N/A 0.328±0.01 0.280±0.00 N/A
ENST00000334035 N/A N/A 14.066±0.00 11.815±0.00 2.969±2.27 2.236±1.76 6.362±1.46 3.576±1.32 4.706±3.16 4.247±3.06 7.294±4.78 2.667±1.25 2.498±0.31 2.786±0.00
ENST00000517880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520867 N/A N/A N/A N/A N/A N/A 11.375±5.61 N/A N/A N/A 8.242±0.00 N/A N/A N/A
ENST00000522336 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145919 ENST00000285908 N/A 3.034±0.00 N/A 1.981±0.76 N/A 1.879±0.00 0.494±0.00 1.427±0.00 0.906±0.00 2.189±0.00 N/A N/A N/A 6.050±0.00
ENST00000311086 15.256±0.00 8.342±0.00 1.582±0.00 5.383±2.25 4.338±2.14 9.416±6.48 6.967±5.77 10.892±0.00 2.670±1.55 6.588±5.85 20.403±0.00 19.264±12.47 15.498±1.25 19.662±3.10
ENST00000462674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.396±0.00 21.608±0.00
ENST00000471339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.410±0.00 20.092±0.00 N/A 24.155±0.00
ENST00000477985 10.050±0.00 8.080±0.00 1.144±0.00 5.779±1.94 5.241±0.73 10.149±0.00 4.373±2.25 8.143±4.23 3.609±0.00 5.394±3.28 10.515±2.08 3.343±0.00 N/A 17.191±0.00
ENST00000480951 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.382±0.00 10.823±0.00 23.560±0.00
ENST00000518658 N/A N/A 1.310±0.00 N/A N/A N/A N/A 3.267±0.00 N/A 1.546±0.00 N/A N/A N/A N/A
ENSG00000253428 ENST00000521373 N/A N/A N/A N/A 0.383±0.00 1.152±0.00 N/A 0.664±0.00 0.194±0.00 N/A N/A 0.056±0.00 0.122±0.00 0.123±0.00
ENSG00000253686 ENST00000517733 N/A N/A N/A 0.122±0.00 0.352±0.00 N/A N/A N/A N/A 0.365±0.00 N/A 0.036±0.00 N/A 0.099±0.04
ENST00000518902 N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521128 0.048±0.00 0.172±0.00 0.060±0.00 0.179±0.11 0.260±0.09 0.080±0.00 0.020±0.00 0.084±0.00 0.071±0.00 0.023±0.00 N/A 0.045±0.04 0.031±0.01 0.047±0.01
ENSG00000253959 ENST00000523242 N/A N/A N/A 0.253±0.00 N/A N/A N/A N/A 0.194±0.00 0.549±0.00 N/A 0.061±0.00 N/A N/A
ENSG00000254211 ENST00000518675 N/A 0.464±0.00 N/A N/A N/A 0.104±0.00 0.076±0.00 N/A N/A N/A N/A 0.252±0.14 N/A 0.110±0.00
ENST00000520324 1.734±0.00 0.688±0.00 N/A 0.308±0.00 3.545±0.00 0.155±0.00 0.121±0.00 0.610±0.00 7.449±0.00 N/A N/A N/A 0.101±0.02 0.177±0.00
ENST00000522571 N/A N/A 1.976±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522731 N/A N/A N/A N/A 0.101±0.00 N/A N/A 2.453±0.00 1.034±0.00 0.252±0.00 N/A 0.401±0.00 N/A N/A
ENST00000523617 0.956±0.00 N/A N/A N/A N/A 0.452±0.00 0.076±0.00 6.118±0.00 8.566±0.00 0.113±0.00 N/A 0.100±0.01 0.078±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020300 ENSMUST00000020543 2.640±0.85 2.951±1.23 N/A N/A 1.649±0.38 3.146±1.23 2.249±0.00 4.620±1.91 3.049±0.00 3.756±1.87 N/A 1.760±0.88 N/A 9.408±3.44
ENSMUST00000109412 3.603±1.74 5.634±1.34 1.793±0.13 5.356±3.53 3.579±0.62 4.365±1.81 4.515±0.87 8.116±3.22 8.080±5.75 5.985±0.84 N/A 2.116±0.61 2.789±0.03 0.997±0.00
ENSMUST00000155278 1.502±0.34 N/A 4.228±0.69 2.960±0.51 1.265±0.00 1.231±0.16 1.803±0.30 2.961±0.49 6.481±4.08 3.502±0.11 7.341±1.94 1.314±0.76 3.156±2.58 5.650±0.36
ENSMUSG00000044502 ENSMUST00000058060 33.572±1.70 51.868±37.99 38.870±10.00 76.998±12.53 34.014±10.21 36.190±2.64 55.807±10.00 69.431±8.30 14.308±2.47 27.571±5.84 89.204±11.05 52.033±12.09 47.835±29.29 55.965±12.81
ENSMUST00000109415 N/A 6.696±0.33 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085772 ENSMUST00000126265 N/A N/A N/A 0.042±0.02 0.342±0.20 0.096±0.00 N/A N/A 0.402±0.21 N/A 0.138±0.00 0.323±0.10 0.282±0.00 0.083±0.03
ENSMUST00000129425 0.145±0.00 2.151±1.14 0.055±0.00 0.025±0.01 0.220±0.12 0.222±0.01 0.059±0.00 5.423±0.00 0.514±0.15 0.921±0.04 0.245±0.03 0.834±0.33 0.168±0.01 0.060±0.00
ENSMUST00000134944 0.320±0.18 1.078±0.22 0.238±0.08 0.032±0.00 0.218±0.01 0.376±0.23 0.097±0.04 6.388±0.29 0.491±0.32 2.149±0.37 0.402±0.17 1.139±0.34 0.147±0.08 0.142±0.07
ENSMUSG00000086335 ENSMUST00000132857 N/A N/A N/A 0.037±0.00 0.318±0.02 N/A N/A 0.070±0.02 0.062±0.03 N/A 0.070±0.03 N/A 0.232±0.20 3.646±0.57

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