C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000114125 RNF7 9606 + 3:141738204-141747560 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000273480 RNF7-001 141738204-141747560 protein_coding
  ENST00000393000 RNF7-002 141738297-141745702 protein_coding
  ENST00000477012 RNF7-003 141738304-141745669 nonsense_mediated_decay
  ENST00000477393 RNF7-004 141738319-141745517 nonsense_mediated_decay
  ENST00000480908 RNF7-007 141738277-141745700 protein_coding
  ENST00000486377 RNF7-005 141745842-141746394 processed_transcript
  ENST00000498828 RNF7-006 141738249-141743027 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000273480ENST00000393000ENST00000477012ENST00000477393ENST00000480908
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000273480 2.194±0.00 3.098±0.00 0.298±0.00 1.664±0.03 1.862±0.00 1.926±0.00 1.101±0.00 1.765±0.02 1.624±0.82 1.103±0.11 1.076±0.41 3.386±0.32 3.668±0.91 3.291±0.59
ENST00000393000 21.803±0.00 30.809±0.00 1.009±0.00 11.644±0.00 14.384±9.85 25.443±24.24 13.789±0.00 31.581±0.00 11.031±0.00 21.248±0.00 15.369±0.00 26.841±20.58 35.401±13.97 24.224±17.94
ENST00000477012 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.718±0.00 N/A N/A N/A
ENST00000477393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.765±0.00 N/A 15.372±0.00
ENST00000480908 8.414±0.00 9.130±0.00 N/A 7.078±2.38 7.757±0.00 1.938±0.00 10.105±8.15 8.241±5.64 9.327±3.68 23.061±0.00 8.331±1.00 N/A N/A 10.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005507 TAS copper ion binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0008631 TAS intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016567 IEA protein ubiquitination
GO:0019788 IDA NEDD8 ligase activity
GO:0031466 IDA Cul5-RING ubiquitin ligase complex
GO:0043066 TAS negative regulation of apoptotic process
GO:0045116 IDA protein neddylation
GO:0051775 TAS response to redox state

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055524 rnf7 ring finger protein 7 protein_coding Danio_rerio
ENSMUSG00000048185 Gm7075 predicted gene 7075 protein_coding Mus_musculus
ENSMUSG00000051234 Rnf7 ring finger protein 7 protein_coding Mus_musculus

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