C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051234 Rnf7 10090 - 9:96470937-96478675 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057500 Rnf7-001 96470937-96478675 protein_coding
  ENSMUST00000071301 Rnf7-002 96471763-96478610 protein_coding
  ENSMUST00000128955 Rnf7-003 96473862-96478588 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057500ENSMUST00000071301ENSMUST00000128955
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057500 24.058±0.68 12.546±1.48 45.346±5.35 49.427±25.82 15.060±3.04 12.623±1.64 26.229±0.62 30.166±6.09 27.901±20.76 23.144±2.62 45.851±9.55 20.978±4.00 36.694±15.23 43.797±18.34
ENSMUST00000071301 N/A N/A N/A N/A N/A N/A N/A N/A 85.271±0.00 N/A N/A N/A N/A N/A
ENSMUST00000128955 73.593±17.35 31.158±9.21 42.481±0.00 135.639±0.00 48.644±8.41 49.542±8.16 65.541±10.37 80.038±6.62 24.226±4.94 77.861±11.46 N/A 66.087±20.75 144.340±2.61 150.393±35.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0002 VISTA 9:96080125-96682941

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006919 IDA activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0008270 IEA zinc ion binding
GO:0008631 IDA intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0008637 IDA apoptotic mitochondrial changes
GO:0016567 IEA protein ubiquitination
GO:0019788 ISS NEDD8 ligase activity
GO:0043066 IDA negative regulation of apoptotic process
GO:0045116 ISS protein neddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055524 rnf7 ring finger protein 7 protein_coding Danio_rerio
ENSG00000114125 RNF7 ring finger protein 7 protein_coding Homo_sapiens

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