C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393000 RNF7-002 ENSG00000114125 9606 + 3:141738297-141745702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393000
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393000 21.803±0.00 30.809±0.00 1.009±0.00 11.644±0.00 14.384±9.85 25.443±24.24 13.789±0.00 31.581±0.00 11.031±0.00 21.248±0.00 15.369±0.00 26.841±20.58 35.401±13.97 24.224±17.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005507 TAS copper ion binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0008631 TAS intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016567 IEA protein ubiquitination
GO:0019788 IDA NEDD8 ligase activity
GO:0031466 IDA Cul5-RING ubiquitin ligase complex
GO:0043066 TAS negative regulation of apoptotic process
GO:0045116 IDA protein neddylation
GO:0051775 TAS response to redox state

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057500 Rnf7-001 protein_coding Mus_musculus 0 494
ENSMUST00000071301 Rnf7-002 protein_coding Mus_musculus 0 470
ENSMUST00000054760 Gm7075-201 protein_coding Mus_musculus 0 440
ENSMUST00000121986 Gm12362-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000151704 Gm6152-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000128955 Rnf7-003 processed_transcript Mus_musculus 0 283
ENSDART00000077895 rnf7-001 protein_coding Danio_rerio 0 254

Loading