C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480908 RNF7-007 ENSG00000114125 9606 + 3:141738277-141745700 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleTestisENST00000480908
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Testis
ENST00000480908 8.414±0.00 9.130±0.00 7.078±2.38 7.757±0.00 1.938±0.00 10.105±8.15 8.241±5.64 9.327±3.68 23.061±0.00 8.331±1.00 10.998±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I1 CIL_0008I1_0001 VISTA 3:141560621-142161968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005507 TAS copper ion binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0008631 TAS intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016567 IEA protein ubiquitination
GO:0019788 IDA NEDD8 ligase activity
GO:0031466 IDA Cul5-RING ubiquitin ligase complex
GO:0043066 TAS negative regulation of apoptotic process
GO:0045116 IDA protein neddylation
GO:0051775 TAS response to redox state

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057500 Rnf7-001 protein_coding Mus_musculus 0 267
ENSMUST00000128955 Rnf7-003 processed_transcript Mus_musculus 0 257
ENSMUST00000071301 Rnf7-002 protein_coding Mus_musculus 0 248
ENSMUST00000054760 Gm7075-201 protein_coding Mus_musculus 0 226
ENSMUST00000121986 Gm12362-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000151704 Gm6152-001 processed_pseudogene Mus_musculus 5.60519e-45 185
ENSDART00000077895 rnf7-001 protein_coding Danio_rerio 1e-20 104

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