C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115163 CENPA 9606 + 2:26764289-26801067 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233505 CENPA-006 26786068-26794589 protein_coding
  ENST00000335756 CENPA-001 26785997-26794593 protein_coding
  ENST00000419525 CENPA-005 26786102-26793942 nonsense_mediated_decay
  ENST00000460030 CENPA-002 26786143-26801067 processed_transcript
  ENST00000472719 CENPA-004 26786027-26794076 processed_transcript
  ENST00000475662 CENPA-003 26764289-26794589 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000233505ENST00000335756
Transcript ID Ovary Placenta Testis
ENST00000233505 4.329±0.00 2.760±0.00 2.429±0.00
ENST00000335756 1.939±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0001 VISTA 2:26419781-27023232
CIL_00004N CIL_00004N_0001 CGP 2:26692690-26781231
CIL_00004O CIL_00004O_0001 CGP 2:26764284-26801067
CIL_00004H CIL_00004H_0001 CGP 2:26764289-26950351

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000132 IMP establishment of mitotic spindle orientation
GO:0000278 TAS mitotic cell cycle
GO:0000775 IDA chromosome, centromeric region
GO:0000778 IDA condensed nuclear chromosome kinetochore
GO:0000780 IDA condensed nuclear chromosome, centromeric region
GO:0000786 IEA nucleosome
GO:0000939 IEA condensed chromosome inner kinetochore
GO:0003677 IEA DNA binding
GO:0003682 TAS chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006334 TAS nucleosome assembly
GO:0016032 IEA viral process
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0046982 IEA protein heterodimerization activity
GO:0051382 IDA kinetochore assembly
GO:0071459 IDA protein localization to chromosome, centromeric region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000093022 seph selenoprotein H protein_coding Danio_rerio
ENSMUSG00000029177 Cenpa centromere protein A protein_coding Mus_musculus

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