C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: centromere protein A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029177 Cenpa 10090 + 5:30666777-30674827 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031073 Cenpa-003 30666974-30674409 nonsense_mediated_decay
  ENSMUST00000133316 Cenpa-002 30666777-30674378 nonsense_mediated_decay
  ENSMUST00000134372 Cenpa-007 30671955-30674202 retained_intron
  ENSMUST00000134846 Cenpa-004 30666912-30674315 nonsense_mediated_decay
  ENSMUST00000144742 Cenpa-001 30666886-30674827 protein_coding
  ENSMUST00000149759 Cenpa-006 30666943-30669759 processed_transcript
  ENSMUST00000150810 Cenpa-005 30666935-30674409 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031073ENSMUST00000133316ENSMUST00000134372ENSMUST00000134846ENSMUST00000144742ENSMUST00000150810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031073 N/A N/A N/A N/A 2.152±0.00 N/A N/A N/A N/A N/A N/A 7.234±0.69 N/A N/A
ENSMUST00000133316 3.457±1.85 6.017±1.50 1.756±0.21 12.338±2.44 7.473±2.49 12.646±2.05 15.039±1.57 1.985±0.40 22.900±23.59 4.737±0.51 0.495±0.12 10.727±2.96 11.891±8.92 1.298±0.19
ENSMUST00000134372 0.876±0.00 N/A N/A 6.517±0.00 2.013±0.00 N/A 4.512±0.04 0.616±0.04 5.528±4.54 N/A 0.192±0.06 3.630±1.67 0.770±0.00 0.477±0.00
ENSMUST00000134846 N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A 0.633±0.14 5.103±0.00 N/A 0.599±0.00
ENSMUST00000144742 1.172±0.50 1.466±0.00 1.165±0.00 5.123±3.99 3.128±0.56 3.910±0.40 N/A 0.482±0.04 27.330±9.37 1.265±0.10 0.339±0.14 4.438±0.70 11.963±6.99 0.981±0.30
ENSMUST00000150810 N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A 0.426±0.00 N/A 0.252±0.02 2.375±0.00 3.919±4.43 0.425±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WF CIL_0007WF_0002 VISTA 5:30314016-30916922
CIL_00004O CIL_00004O_0002 CGP 5:30647933-30674827
CIL_00004H CIL_00004H_0002 CGP 5:30666777-30799375

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000132 IEA establishment of mitotic spindle orientation
GO:0000775 ISO chromosome, centromeric region
GO:0000778 IEA condensed nuclear chromosome kinetochore
GO:0000780 IEA condensed nuclear chromosome, centromeric region
GO:0000786 IEA nucleosome
GO:0000939 IDA condensed chromosome inner kinetochore
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0046982 IEA protein heterodimerization activity
GO:0051382 IEA kinetochore assembly
GO:0071459 IEA protein localization to chromosome, centromeric region

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000093022 seph selenoprotein H protein_coding Danio_rerio
ENSG00000115163 CENPA centromere protein A protein_coding Homo_sapiens

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