C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00004O_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213699-ENSG00000115163 CGP 9606 2:26764284-26801067
GeneTranscriptPositionBiotype
ENSG00000115163 (CENPA)
centromere protein A 		ENST00000233505 (CENPA-006) 26786068-26794589 protein_coding
ENST00000335756 (CENPA-001) 26785997-26794593 protein_coding
ENST00000419525 (CENPA-005) 26786102-26793942 nonsense_mediated_decay
ENST00000460030 (CENPA-002) 26786143-26801067 processed_transcript
ENST00000472719 (CENPA-004) 26786027-26794076 processed_transcript
ENST00000475662 (CENPA-003) 26764289-26794589 processed_transcript
ENSG00000213699 (SLC35F6)
solute carrier family 35, member F6 		ENST00000344420 (SLC35F6-001) 26764288-26781231 protein_coding
ENST00000414029 (SLC35F6-003) 26764325-26781147 nonsense_mediated_decay
ENST00000429494 (SLC35F6-002) 26764284-26781140 nonsense_mediated_decay
ENST00000482746 (SLC35F6-004) 26764290-26778219 processed_transcript
CIL_00004O_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029175-ENSMUSG00000029177 CGP 10090 5:30647933-30674827
GeneTranscriptPositionBiotype
ENSMUSG00000029175 (Slc35f6)
solute carrier family 35, member F6 		ENSMUST00000062962 (Slc35f6-001) 30647933-30659731 protein_coding
ENSMUST00000124474 (Slc35f6-003) 30648012-30658191 nonsense_mediated_decay
ENSMUST00000131978 (Slc35f6-004) 30647976-30656100 retained_intron
ENSMUST00000143867 (Slc35f6-002) 30647967-30658191 nonsense_mediated_decay
ENSMUSG00000029177 (Cenpa)
centromere protein A 		ENSMUST00000031073 (Cenpa-003) 30666974-30674409 nonsense_mediated_decay
ENSMUST00000133316 (Cenpa-002) 30666777-30674378 nonsense_mediated_decay
ENSMUST00000134372 (Cenpa-007) 30671955-30674202 retained_intron
ENSMUST00000134846 (Cenpa-004) 30666912-30674315 nonsense_mediated_decay
ENSMUST00000144742 (Cenpa-001) 30666886-30674827 protein_coding
ENSMUST00000149759 (Cenpa-006) 30666943-30669759 processed_transcript
ENSMUST00000150810 (Cenpa-005) 30666935-30674409 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004O_0001ENSG00000115163ENST00000233505ENST00000335756ENST00000419525ENST00000460030ENST00000472719ENST00000475662ENSG00000213699ENST00000344420ENST00000414029ENST00000429494ENST00000482746CIL_00004O_0002ENSMUSG00000029175ENSMUST00000062962ENSMUST00000124474ENSMUST00000131978ENSMUST00000143867ENSMUSG00000029177ENSMUST00000031073ENSMUST00000133316ENSMUST00000134372ENSMUST00000134846ENSMUST00000144742ENSMUST00000149759ENSMUST00000150810
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004O_0001ENSG00000115163ENST00000233505ENST00000335756ENSG00000213699ENST00000344420ENST00000414029ENST00000429494CIL_00004O_0002ENSMUSG00000029175ENSMUST00000062962ENSMUST00000124474ENSMUST00000143867ENSMUSG00000029177ENSMUST00000031073ENSMUST00000133316ENSMUST00000134372ENSMUST00000134846ENSMUST00000144742ENSMUST00000150810
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115163 ENST00000233505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.329±0.00 2.760±0.00 2.429±0.00
ENST00000335756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.939±0.00 N/A N/A
ENST00000419525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213699 ENST00000344420 11.831±0.00 9.363±0.00 1.682±0.00 3.251±1.62 3.585±1.06 2.359±1.11 2.811±1.81 8.143±0.00 6.130±0.00 2.717±1.00 2.891±0.00 5.115±3.63 6.232±3.27 3.178±2.35
ENST00000414029 N/A N/A N/A 2.729±0.00 N/A N/A N/A 4.844±2.62 4.031±0.00 1.232±0.00 3.302±2.75 2.119±0.42 4.309±0.00 N/A
ENST00000429494 21.709±0.00 6.453±0.00 N/A N/A 7.360±0.00 4.118±0.00 1.733±1.22 5.949±0.00 1.992±0.00 2.620±0.90 3.164±0.00 3.132±0.00 4.133±0.00 3.065±0.77
ENST00000482746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029175 ENSMUST00000062962 7.002±0.60 15.464±3.98 9.330±0.24 3.650±0.55 7.932±3.17 12.210±1.64 11.491±1.48 6.400±1.14 3.958±1.24 9.622±0.62 3.227±0.43 11.759±2.69 11.010±7.63 3.155±1.25
ENSMUST00000124474 7.303±2.20 8.431±0.55 N/A 2.816±0.12 8.754±3.81 8.780±2.12 8.706±1.90 5.939±0.54 2.075±0.50 10.123±2.53 1.816±0.13 11.625±0.00 9.940±0.94 2.844±0.00
ENSMUST00000131978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143867 12.271±5.55 17.119±5.58 9.783±1.28 7.034±0.24 16.790±4.35 21.404±8.13 19.598±2.35 6.332±2.14 5.172±1.41 14.451±4.24 1.770±0.66 33.116±5.02 19.921±15.72 5.472±1.45
ENSMUSG00000029177 ENSMUST00000031073 N/A N/A N/A N/A 2.152±0.00 N/A N/A N/A N/A N/A N/A 7.234±0.69 N/A N/A
ENSMUST00000133316 3.457±1.85 6.017±1.50 1.756±0.21 12.338±2.44 7.473±2.49 12.646±2.05 15.039±1.57 1.985±0.40 22.900±23.59 4.737±0.51 0.495±0.12 10.727±2.96 11.891±8.92 1.298±0.19
ENSMUST00000134372 0.876±0.00 N/A N/A 6.517±0.00 2.013±0.00 N/A 4.512±0.04 0.616±0.04 5.528±4.54 N/A 0.192±0.06 3.630±1.67 0.770±0.00 0.477±0.00
ENSMUST00000134846 N/A N/A N/A N/A N/A N/A N/A 0.442±0.00 N/A N/A 0.633±0.14 5.103±0.00 N/A 0.599±0.00
ENSMUST00000144742 1.172±0.50 1.466±0.00 1.165±0.00 5.123±3.99 3.128±0.56 3.910±0.40 N/A 0.482±0.04 27.330±9.37 1.265±0.10 0.339±0.14 4.438±0.70 11.963±6.99 0.981±0.30
ENSMUST00000149759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150810 N/A N/A N/A 0.770±0.00 N/A N/A N/A N/A 0.426±0.00 N/A 0.252±0.02 2.375±0.00 3.919±4.43 0.425±0.14

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