C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00004N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171303-ENSG00000213699 CGP 9606 2:26692690-26781231
GeneTranscriptPositionBiotype
ENSG00000115163 (CENPA)
centromere protein A 		ENST00000233505 (CENPA-006) 26786068-26794589 protein_coding
ENST00000335756 (CENPA-001) 26785997-26794593 protein_coding
ENST00000419525 (CENPA-005) 26786102-26793942 nonsense_mediated_decay
ENST00000460030 (CENPA-002) 26786143-26801067 processed_transcript
ENST00000472719 (CENPA-004) 26786027-26794076 processed_transcript
ENST00000475662 (CENPA-003) 26764289-26794589 processed_transcript
ENSG00000171303 (KCNK3)
potassium channel, subfamily K, member 3 		ENST00000302909 (KCNK3-001) 26692751-26733420 protein_coding
ENST00000620977 (KCNK3-201) 26692690-26729255 protein_coding
ENSG00000213699 (SLC35F6)
solute carrier family 35, member F6 		ENST00000344420 (SLC35F6-001) 26764288-26781231 protein_coding
ENST00000414029 (SLC35F6-003) 26764325-26781147 nonsense_mediated_decay
ENST00000429494 (SLC35F6-002) 26764284-26781140 nonsense_mediated_decay
ENST00000482746 (SLC35F6-004) 26764290-26778219 processed_transcript
CIL_00004N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049265-ENSMUSG00000029175 CGP 10090 5:30588170-30659731
GeneTranscriptPositionBiotype
ENSMUSG00000029175 (Slc35f6)
solute carrier family 35, member F6 		ENSMUST00000062962 (Slc35f6-001) 30647933-30659731 protein_coding
ENSMUST00000124474 (Slc35f6-003) 30648012-30658191 nonsense_mediated_decay
ENSMUST00000131978 (Slc35f6-004) 30647976-30656100 retained_intron
ENSMUST00000143867 (Slc35f6-002) 30647967-30658191 nonsense_mediated_decay
ENSMUSG00000049265 (Kcnk3)
potassium channel, subfamily K, member 3 		ENSMUST00000066295 (Kcnk3-201) 30588170-30625270 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004N_0001ENSG00000115163ENST00000233505ENST00000335756ENST00000419525ENST00000460030ENST00000472719ENST00000475662ENSG00000171303ENST00000302909ENST00000620977ENSG00000213699ENST00000344420ENST00000414029ENST00000429494ENST00000482746CIL_00004N_0002ENSMUSG00000029175ENSMUST00000062962ENSMUST00000124474ENSMUST00000131978ENSMUST00000143867ENSMUSG00000049265ENSMUST00000066295
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00004N_0001ENSG00000115163ENST00000233505ENST00000335756ENSG00000171303ENST00000302909ENST00000620977ENSG00000213699ENST00000344420ENST00000414029ENST00000429494CIL_00004N_0002ENSMUSG00000029175ENSMUST00000062962ENSMUST00000124474ENSMUST00000143867ENSMUSG00000049265ENSMUST00000066295
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115163 ENST00000233505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.329±0.00 2.760±0.00 2.429±0.00
ENST00000335756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.939±0.00 N/A N/A
ENST00000419525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460030 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171303 ENST00000302909 0.269±0.00 2.962±0.00 0.095±0.00 0.606±0.00 0.273±0.00 0.713±0.00 0.173±0.15 0.488±0.00 0.136±0.00 14.013±0.00 0.034±0.00 1.408±1.70 8.183±0.00 0.609±0.44
ENST00000620977 N/A N/A N/A N/A 0.554±0.00 N/A 0.524±0.38 N/A 0.339±0.00 N/A 0.251±0.00 5.302±0.00 18.475±6.19 0.121±0.00
ENSG00000213699 ENST00000344420 11.831±0.00 9.363±0.00 1.682±0.00 3.251±1.62 3.585±1.06 2.359±1.11 2.811±1.81 8.143±0.00 6.130±0.00 2.717±1.00 2.891±0.00 5.115±3.63 6.232±3.27 3.178±2.35
ENST00000414029 N/A N/A N/A 2.729±0.00 N/A N/A N/A 4.844±2.62 4.031±0.00 1.232±0.00 3.302±2.75 2.119±0.42 4.309±0.00 N/A
ENST00000429494 21.709±0.00 6.453±0.00 N/A N/A 7.360±0.00 4.118±0.00 1.733±1.22 5.949±0.00 1.992±0.00 2.620±0.90 3.164±0.00 3.132±0.00 4.133±0.00 3.065±0.77
ENST00000482746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029175 ENSMUST00000062962 7.002±0.60 15.464±3.98 9.330±0.24 3.650±0.55 7.932±3.17 12.210±1.64 11.491±1.48 6.400±1.14 3.958±1.24 9.622±0.62 3.227±0.43 11.759±2.69 11.010±7.63 3.155±1.25
ENSMUST00000124474 7.303±2.20 8.431±0.55 N/A 2.816±0.12 8.754±3.81 8.780±2.12 8.706±1.90 5.939±0.54 2.075±0.50 10.123±2.53 1.816±0.13 11.625±0.00 9.940±0.94 2.844±0.00
ENSMUST00000131978 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143867 12.271±5.55 17.119±5.58 9.783±1.28 7.034±0.24 16.790±4.35 21.404±8.13 19.598±2.35 6.332±2.14 5.172±1.41 14.451±4.24 1.770±0.66 33.116±5.02 19.921±15.72 5.472±1.45
ENSMUSG00000049265 ENSMUST00000066295 19.471±4.98 1223.962±205.86 10.876±2.38 2.242±0.91 26.194±8.27 5.919±0.36 62.761±10.87 4.589±0.47 0.167±0.13 16.258±4.57 0.097±0.06 34.368±16.31 0.432±0.38 0.301±0.15

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