C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phospholipase C, delta 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115556 PLCD4 9606 + 2:218607765-218637184 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000415854 PLCD4-011 218609242-218618693 protein_coding
  ENST00000417849 PLCD4-006 218607919-218637181 protein_coding
  ENST00000432688 PLCD4-007 218609740-218637175 protein_coding
  ENST00000444453 PLCD4-009 218607899-218621548 nonsense_mediated_decay
  ENST00000446503 PLCD4-010 218607899-218622186 nonsense_mediated_decay
  ENST00000450993 PLCD4-001 218607765-218637181 protein_coding
  ENST00000457773 PLCD4-015 218635855-218637173 protein_coding
  ENST00000458239 PLCD4-013 218630646-218634554 nonsense_mediated_decay
  ENST00000459791 PLCD4-008 218622362-218637184 retained_intron
  ENST00000465713 PLCD4-005 218607919-218633880 retained_intron
  ENST00000469493 PLCD4-003 218607899-218629215 retained_intron
  ENST00000473443 PLCD4-004 218607916-218637173 retained_intron
  ENST00000483685 PLCD4-002 218607855-218636648 retained_intron
  ENST00000484718 PLCD4-014 218633639-218636388 retained_intron
  ENST00000497482 PLCD4-012 218629354-218633672 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000417849ENST00000432688ENST00000450993ENST00000457773ENST00000458239ENST00000459791ENST00000473443ENST00000483685ENST00000484718
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000417849 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.657±0.00 N/A 0.126±0.00 N/A
ENST00000432688 0.190±0.00 N/A 0.243±0.00 N/A N/A 0.281±0.00 N/A N/A N/A N/A 0.153±0.00 N/A 2.511±0.84
ENST00000450993 N/A N/A N/A 0.609±0.00 2.221±0.00 N/A 2.530±0.00 0.883±0.00 N/A 5.103±3.43 1.153±0.00 N/A N/A
ENST00000457773 1.048±0.00 N/A N/A N/A N/A 0.857±0.00 N/A N/A 0.677±0.00 N/A N/A N/A N/A
ENST00000458239 N/A N/A N/A 1.072±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459791 N/A 0.519±0.00 0.158±0.00 0.352±0.00 N/A 0.070±0.00 1.316±0.00 N/A N/A N/A 0.322±0.00 N/A N/A
ENST00000473443 N/A N/A N/A 0.346±0.27 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A 0.922±0.00
ENST00000483685 N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484718 N/A N/A N/A N/A N/A N/A N/A N/A 0.328±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066C CIL_00066C_0001 CGP 2:218568580-218637184
CIL_0000AR CIL_0000AR_0002 CGP 2:218607765-218659655

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004435 IEA phosphatidylinositol phospholipase C activity
GO:0004629 IEA phospholipase C activity
GO:0004871 IEA signal transducer activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006629 IEA lipid metabolic process
GO:0007165 IEA signal transduction
GO:0007340 IEA acrosome reaction
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0046488 IEA phosphatidylinositol metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040684 plcd4b phospholipase C, delta 4b protein_coding Danio_rerio
ENSMUSG00000026173 Plcd4 phospholipase C, delta 4 protein_coding Mus_musculus

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