C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase C, delta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000450993 PLCD4-001 ENSG00000115556 9606 + 2:218607765-218637181 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyLiverMuscleOvaryENST00000450993
Transcript ID Brain Colon Kidney Liver Muscle Ovary
ENST00000450993 0.609±0.00 2.221±0.00 2.530±0.00 0.883±0.00 5.103±3.43 1.153±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00066C CIL_00066C_0001 CGP 2:218568580-218637184
CIL_0000AR CIL_0000AR_0002 CGP 2:218607765-218659655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004435 IEA phosphatidylinositol phospholipase C activity
GO:0004629 IEA phospholipase C activity
GO:0004871 IEA signal transducer activity
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006629 IEA lipid metabolic process
GO:0007165 IEA signal transduction
GO:0007340 IEA acrosome reaction
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0046488 IEA phosphatidylinositol metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067916 Plcd4-201 protein_coding Mus_musculus 0 1110
ENSMUST00000113749 Plcd4-202 protein_coding Mus_musculus 0 1110
ENSMUST00000113750 Plcd4-006 protein_coding Mus_musculus 0 1110
ENSMUST00000113747 Plcd4-004 protein_coding Mus_musculus 0 1110
ENSMUST00000113745 Plcd4-005 retained_intron Mus_musculus 0 1110
ENSMUST00000141412 Plcd4-003 nonsense_mediated_decay Mus_musculus 0 1110
ENSMUST00000152707 Plcd4-002 nonsense_mediated_decay Mus_musculus 0 1103
ENSMUST00000027362 Plcd4-001 protein_coding Mus_musculus 0 1103

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