C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phospholipase C, delta 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026173 Plcd4 10090 + 1:74542888-74567794 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027362 Plcd4-001 74544364-74565977 protein_coding
  ENSMUST00000067916 Plcd4-201 74542888-74567794 protein_coding
  ENSMUST00000113745 Plcd4-005 74542903-74560606 retained_intron
  ENSMUST00000113747 Plcd4-004 74542903-74565977 protein_coding
  ENSMUST00000113749 Plcd4-202 74542888-74567794 protein_coding
  ENSMUST00000113750 Plcd4-006 74542903-74565977 protein_coding
  ENSMUST00000135111 Plcd4-007 74564437-74565626 retained_intron
  ENSMUST00000141412 Plcd4-003 74542888-74567794 nonsense_mediated_decay
  ENSMUST00000152707 Plcd4-002 74544364-74565977 nonsense_mediated_decay
  ENSMUST00000185411 Plcd4-008 74544360-74546271 retained_intron
  ENSMUST00000189956 Plcd4-009 74560427-74565301 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleTestisENSMUST00000027362ENSMUST00000113747ENSMUST00000152707
Transcript ID Brain Breast Muscle Testis
ENSMUST00000027362 N/A N/A N/A 17.574±9.22
ENSMUST00000113747 5.158±0.00 6.850±1.51 28.334±11.33 N/A
ENSMUST00000152707 N/A N/A N/A 8.000±1.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000651 CIL_000651_0002 CGP 1:74409376-74544284
CIL_00064Y CIL_00064Y_0002 CGP 1:74435511-74544284
CIL_00066C CIL_00066C_0002 CGP 1:74506058-74567794
CIL_0000AR CIL_0000AR_0003 CGP 1:74542888-74588246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004435 IEA phosphatidylinositol phospholipase C activity
GO:0004629 TAS phospholipase C activity
GO:0004871 IEA signal transducer activity
GO:0005509 IEA calcium ion binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0007165 TAS signal transduction
GO:0007340 IMP acrosome reaction
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0035556 IEA intracellular signal transduction
GO:0046488 TAS phosphatidylinositol metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040684 plcd4b phospholipase C, delta 4b protein_coding Danio_rerio
ENSG00000115556 PLCD4 phospholipase C, delta 4 protein_coding Homo_sapiens

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