C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00066C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144580-ENSG00000115556 CGP 9606 2:218568580-218637184
GeneTranscriptPositionBiotype
ENSG00000144580 (RQCD1)
RCD1 required for cell differentiation1 homolog (S. pombe) 		ENST00000273064 (RQCD1-001) 218568580-218597080 protein_coding
ENST00000295701 (RQCD1-002) 218568875-218593845 protein_coding
ENST00000418808 (RQCD1-007) 218592316-218594896 protein_coding
ENST00000432877 (RQCD1-004) 218568859-218584656 nonsense_mediated_decay
ENST00000433439 (RQCD1-003) 218568815-218580724 nonsense_mediated_decay
ENST00000473626 (RQCD1-006) 218592304-218593072 retained_intron
ENST00000489687 (RQCD1-005) 218568931-218574159 processed_transcript
ENST00000542068 (RQCD1-201) 218568708-218596424 protein_coding
ENSG00000207393 (RNU6-136P)
RNA, U6 small nuclear 136, pseudogene 		ENST00000384663 (RNU6-136P-201) 218589214-218589320 snRNA
ENSG00000273466 (RP11-548H3.1)
 ENST00000607946 (RP11-548H3.1-001) 218633256-218634014 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00066C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026174-ENSMUSG00000026173 CGP 10090 1:74506058-74567794
GeneTranscriptPositionBiotype
ENSMUSG00000026135 (Zfp142)
zinc finger protein 142 		ENSMUST00000027315 (Zfp142-008) 74566426-74588025 protein_coding
ENSMUST00000066986 (Zfp142-004) 74566502-74588145 protein_coding
ENSMUST00000113737 (Zfp142-001) 74565127-74588028 protein_coding
ENSMUST00000127921 (Zfp142-003) 74566869-74585663 nonsense_mediated_decay
ENSMUST00000130112 (Zfp142-002) 74582232-74587952 retained_intron
ENSMUST00000136865 (Zfp142-006) 74582225-74588195 retained_intron
ENSMUST00000147011 (Zfp142-007) 74585585-74588133 processed_transcript
ENSMUST00000156613 (Zfp142-005) 74566683-74588246 nonsense_mediated_decay
ENSMUSG00000026173 (Plcd4)
phospholipase C, delta 4 		ENSMUST00000027362 (Plcd4-001) 74544364-74565977 protein_coding
ENSMUST00000067916 (Plcd4-201) 74542888-74567794 protein_coding
ENSMUST00000113745 (Plcd4-005) 74542903-74560606 retained_intron
ENSMUST00000113747 (Plcd4-004) 74542903-74565977 protein_coding
ENSMUST00000113749 (Plcd4-202) 74542888-74567794 protein_coding
ENSMUST00000113750 (Plcd4-006) 74542903-74565977 protein_coding
ENSMUST00000135111 (Plcd4-007) 74564437-74565626 retained_intron
ENSMUST00000141412 (Plcd4-003) 74542888-74567794 nonsense_mediated_decay
ENSMUST00000152707 (Plcd4-002) 74544364-74565977 nonsense_mediated_decay
ENSMUST00000185411 (Plcd4-008) 74544360-74546271 retained_intron
ENSMUST00000189956 (Plcd4-009) 74560427-74565301 processed_transcript
ENSMUSG00000026174 (Rqcd1)
rcd1 (required for cell differentiation) homolog 1 (S. pombe) 		ENSMUST00000087215 (Rqcd1-001) 74506058-74530842 protein_coding
ENSMUST00000137100 (Rqcd1-002) 74506060-74527087 processed_transcript
ENSMUST00000147810 (Rqcd1-003) 74523527-74528177 retained_intron
ENSMUSG00000033364 (Usp37)
ubiquitin specific peptidase 37 		ENSMUST00000044260 (Usp37-002) 74435511-74505803 protein_coding
ENSMUST00000186282 (Usp37-007) 74495718-74505806 protein_coding
ENSMUST00000187590 (Usp37-005) 74499956-74506283 processed_transcript
ENSMUST00000188012 (Usp37-004) 74439127-74467574 processed_transcript
ENSMUST00000189257 (Usp37-001) 74437730-74544284 protein_coding
ENSMUST00000190592 (Usp37-006) 74499872-74505791 retained_intron
ENSMUST00000191058 (Usp37-003) 74449502-74505785 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066C_0001ENSG00000144580ENST00000273064ENST00000295701ENST00000418808ENST00000432877ENST00000433439ENST00000473626ENST00000489687ENST00000542068ENSG00000207393ENST00000384663ENSG00000273466ENST00000607946CIL_00066C_0002ENSMUSG00000026135ENSMUST00000027315ENSMUST00000066986ENSMUST00000113737ENSMUST00000127921ENSMUST00000130112ENSMUST00000136865ENSMUST00000147011ENSMUST00000156613ENSMUSG00000026173ENSMUST00000027362ENSMUST00000067916ENSMUST00000113745ENSMUST00000113747ENSMUST00000113749ENSMUST00000113750ENSMUST00000135111ENSMUST00000141412ENSMUST00000152707ENSMUST00000185411ENSMUST00000189956ENSMUSG00000026174ENSMUST00000087215ENSMUST00000137100ENSMUST00000147810ENSMUSG00000033364ENSMUST00000044260ENSMUST00000186282ENSMUST00000187590ENSMUST00000188012ENSMUST00000189257ENSMUST00000190592ENSMUST00000191058
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00066C_0001ENSG00000144580ENST00000273064ENST00000295701ENST00000542068ENSG00000207393ENST00000384663ENSG00000273466ENST00000607946CIL_00066C_0002ENSMUSG00000026135ENSMUST00000027315ENSMUST00000066986ENSMUST00000113737ENSMUST00000127921ENSMUST00000130112ENSMUST00000136865ENSMUST00000156613ENSMUSG00000026173ENSMUST00000027362ENSMUST00000113747ENSMUST00000152707ENSMUSG00000026174ENSMUST00000087215ENSMUSG00000033364ENSMUST00000044260ENSMUST00000188012ENSMUST00000189257
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144580 ENST00000273064 N/A N/A 0.369±0.00 N/A 0.540±0.00 0.692±0.00 N/A N/A N/A 0.679±0.00 1.462±0.00 3.307±0.00 1.716±0.00 N/A
ENST00000295701 N/A N/A 2.126±0.00 2.568±0.00 3.946±0.00 2.960±0.00 1.517±0.75 1.378±0.00 4.520±0.00 4.559±0.00 N/A 6.584±0.00 N/A N/A
ENST00000418808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489687 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542068 7.568±0.00 9.256±0.00 1.387±0.00 2.862±0.77 2.742±0.99 2.928±0.03 1.698±1.41 3.944±2.27 2.530±0.21 4.025±1.73 3.214±0.00 7.296±0.78 3.704±0.29 9.326±1.83
ENSG00000207393 ENST00000384663 0.571±0.00 N/A N/A N/A N/A N/A 0.180±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000273466 ENST00000607946 1.547±0.00 5.159±0.00 N/A 1.584±0.00 N/A 4.366±0.00 0.769±0.38 3.944±3.65 0.646±0.00 0.344±0.00 8.617±1.56 2.981±1.91 1.291±0.44 3.670±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026135 ENSMUST00000027315 2.800±1.14 4.660±1.66 1.822±0.48 6.726±2.14 2.721±0.80 2.543±0.57 1.946±0.23 2.211±0.36 1.105±0.38 2.375±0.37 N/A 3.588±1.37 1.934±0.90 N/A
ENSMUST00000066986 N/A N/A N/A N/A N/A N/A N/A N/A 0.443±0.07 N/A N/A 1.392±0.00 0.734±0.28 N/A
ENSMUST00000113737 1.214±0.37 N/A 0.877±0.10 1.154±0.02 1.396±0.33 N/A 0.591±0.10 0.716±0.11 0.385±0.10 1.300±0.38 3.076±0.20 1.353±0.44 0.590±0.11 2.690±0.26
ENSMUST00000127921 2.503±0.88 N/A 2.615±0.34 7.034±2.88 2.812±0.50 2.851±0.37 1.166±0.31 1.643±0.30 0.982±0.47 1.723±0.00 N/A 3.351±1.53 1.953±0.62 N/A
ENSMUST00000130112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.571±0.00 0.581±0.00 N/A
ENSMUST00000136865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.003±0.17 0.929±0.00 N/A
ENSMUST00000147011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156613 N/A N/A N/A N/A N/A 0.927±0.08 N/A N/A 0.388±0.00 N/A N/A 1.907±0.44 0.819±0.00 N/A
ENSMUSG00000026173 ENSMUST00000027362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.574±9.22
ENSMUST00000067916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113747 N/A N/A N/A 5.158±0.00 6.850±1.51 N/A N/A N/A N/A N/A 28.334±11.33 N/A N/A N/A
ENSMUST00000113749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.000±1.69
ENSMUST00000185411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026174 ENSMUST00000087215 12.796±4.27 9.780±0.83 10.853±1.30 21.374±2.37 9.516±2.38 N/A 4.891±0.80 10.818±0.90 13.945±8.11 9.338±0.64 4.992±0.32 15.672±6.81 18.058±7.15 14.750±0.38
ENSMUST00000137100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000033364 ENSMUST00000044260 1.356±0.00 1.537±0.14 0.607±0.00 3.368±1.22 2.038±0.12 N/A 0.826±0.26 N/A 2.636±1.68 1.774±0.32 0.856±0.39 3.204±0.78 3.344±0.64 1.973±0.00
ENSMUST00000186282 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188012 N/A N/A N/A 4.723±0.00 N/A N/A N/A N/A N/A N/A N/A 7.218±0.00 9.098±0.00 26.740±18.07
ENSMUST00000189257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.243±1.38
ENSMUST00000190592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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