C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115875 SRSF7 9606 - 2:38743599-38751494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313117 SRSF7-001 38743599-38751494 protein_coding
  ENST00000409276 SRSF7-012 38744893-38751358 protein_coding
  ENST00000415527 SRSF7-004 38748047-38751138 nonsense_mediated_decay
  ENST00000425778 SRSF7-002 38743601-38751415 nonsense_mediated_decay
  ENST00000425941 SRSF7-010 38744453-38751363 nonsense_mediated_decay
  ENST00000431066 SRSF7-011 38744895-38751282 nonsense_mediated_decay
  ENST00000432873 SRSF7-008 38744893-38748616 nonsense_mediated_decay
  ENST00000443213 SRSF7-003 38744918-38751352 nonsense_mediated_decay
  ENST00000446327 SRSF7-201 38743599-38751494 protein_coding
  ENST00000452806 SRSF7-007 38744717-38749564 protein_coding
  ENST00000477635 SRSF7-005 38744895-38747044 retained_intron
  ENST00000487773 SRSF7-009 38745053-38748912 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313117ENST00000409276ENST00000425778ENST00000425941ENST00000443213ENST00000446327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313117 N/A N/A 2.004±0.00 6.705±1.70 3.915±0.00 4.847±1.55 2.128±0.00 3.222±0.10 2.761±0.00 2.732±0.00 N/A 9.814±4.77 9.973±2.89 N/A
ENST00000409276 26.871±0.00 35.241±0.00 5.417±0.00 11.012±4.29 19.647±0.16 26.552±6.79 6.299±2.81 14.181±10.50 18.376±4.83 38.878±0.00 11.176±4.94 64.432±47.34 34.462±9.51 65.851±20.78
ENST00000425778 4.278±0.00 9.402±0.00 N/A 3.129±0.00 4.546±1.23 4.399±0.00 1.395±0.67 6.180±0.00 2.409±0.00 5.833±1.15 3.035±0.00 14.443±5.13 4.050±0.09 12.174±0.00
ENST00000425941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.059±0.00 N/A N/A N/A
ENST00000443213 N/A 9.804±0.00 5.285±0.00 5.056±0.00 3.674±0.03 10.287±0.00 2.109±0.00 5.571±0.31 3.346±0.26 6.031±0.00 0.723±0.00 9.292±3.38 N/A N/A
ENST00000446327 N/A N/A N/A 2.037±0.00 N/A N/A N/A N/A 2.905±0.00 N/A N/A 8.474±0.00 N/A 13.818±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067R CIL_00067R_0001 CGP 2:38665910-38751494

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035325 srsf7a serine/arginine-rich splicing factor 7a protein_coding Danio_rerio
ENSMUSG00000024097 Srsf7 serine/arginine-rich splicing factor 7 protein_coding Mus_musculus

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