C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterol carrier protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116171 SCP2 9606 + 1:52927229-53051703 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000371509 SCP2-007 52927286-53050970 protein_coding
  ENST00000371513 SCP2-004 52927318-52994232 protein_coding
  ENST00000371514 SCP2-001 52927229-53051703 protein_coding
  ENST00000407246 SCP2-011 52927286-53051260 protein_coding
  ENST00000408941 SCP2-201 53014938-53051617 protein_coding
  ENST00000430330 SCP2-008 53014928-53051126 protein_coding
  ENST00000435345 SCP2-015 53014968-53051113 protein_coding
  ENST00000473584 SCP2-003 52963641-52988080 processed_transcript
  ENST00000478274 SCP2-006 53014966-53048515 protein_coding
  ENST00000478631 SCP2-009 52927277-53051401 nonsense_mediated_decay
  ENST00000484100 SCP2-005 53014966-53051018 protein_coding
  ENST00000488965 SCP2-002 53014974-53051610 protein_coding
  ENST00000528311 SCP2-010 52927286-53050903 protein_coding
  ENST00000528809 SCP2-012 52927380-52976712 processed_transcript
  ENST00000529363 SCP2-013 52941803-52980453 protein_coding
  ENST00000533119 SCP2-014 53014966-53051062 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000371509ENST00000371513ENST00000371514ENST00000407246ENST00000408941ENST00000430330ENST00000435345ENST00000484100ENST00000528311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000371509 N/A N/A N/A 6.066±0.00 N/A N/A N/A 41.343±0.00 4.485±0.00 N/A 2.134±0.00 4.906±0.00 11.749±0.00 15.996±0.00
ENST00000371513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.415±0.00 N/A N/A N/A
ENST00000371514 12.112±0.00 6.494±0.00 6.039±0.00 4.321±1.35 14.767±0.00 N/A 3.177±0.00 40.029±23.56 7.415±0.00 4.384±1.24 N/A 11.588±8.29 3.008±0.59 14.232±0.00
ENST00000407246 N/A N/A N/A 4.406±0.00 N/A N/A 10.492±0.00 N/A 67.986±0.00 8.583±0.00 3.993±0.00 9.318±0.00 2.618±0.74 N/A
ENST00000408941 11.969±0.00 17.499±0.00 N/A 6.624±1.38 13.054±5.68 25.542±10.06 15.891±0.00 30.601±0.00 72.013±0.00 8.436±2.03 4.634±1.97 9.701±5.69 6.949±1.17 17.442±0.00
ENST00000430330 26.809±0.00 27.374±0.00 N/A 9.692±0.00 27.999±0.00 40.145±0.00 11.823±0.00 29.543±0.00 N/A 14.800±0.00 N/A 27.029±14.03 6.621±1.88 19.558±0.00
ENST00000435345 N/A N/A 12.623±0.00 10.026±0.00 13.573±0.00 25.279±0.00 8.168±0.00 N/A 20.795±0.00 16.888±0.00 N/A 18.768±8.99 20.090±17.68 30.375±0.00
ENST00000484100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.903±0.00 N/A N/A
ENST00000528311 N/A N/A 6.025±0.00 4.861±0.77 4.888±0.00 11.014±0.00 6.299±2.02 59.405±0.00 50.477±0.00 3.509±0.00 4.652±0.61 3.023±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000062 IDA fatty-acyl-CoA binding
GO:0003824 IEA catalytic activity
GO:0004315 IEA 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005777 IDA peroxisome
GO:0005782 TAS peroxisomal matrix
GO:0006633 IEA fatty acid biosynthetic process
GO:0006694 IDA steroid biosynthetic process
GO:0006699 TAS bile acid biosynthetic process
GO:0006701 IDA progesterone biosynthetic process
GO:0006869 IEA lipid transport
GO:0007031 IEA peroxisome organization
GO:0008152 IEA metabolic process
GO:0008206 TAS bile acid metabolic process
GO:0008526 IDA phosphatidylinositol transporter activity
GO:0015485 IDA cholesterol binding
GO:0015914 IDA phospholipid transport
GO:0016020 IDA membrane
GO:0016747 IEA transferase activity, transferring acyl groups other than amino-acyl groups
GO:0032385 IDA positive regulation of intracellular cholesterol transport
GO:0032959 IDA inositol trisphosphate biosynthetic process
GO:0033540 TAS fatty acid beta-oxidation using acyl-CoA oxidase
GO:0033559 TAS unsaturated fatty acid metabolic process
GO:0033814 IEA propanoyl-CoA C-acyltransferase activity
GO:0036042 IDA long-chain fatty acyl-CoA binding
GO:0036109 TAS alpha-linolenic acid metabolic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045940 IDA positive regulation of steroid metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0070538 IDA oleic acid binding
GO:0072659 IDA protein localization to plasma membrane
GO:1901373 IDA lipid hydroperoxide transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036496 scp2b sterol carrier protein 2b protein_coding Danio_rerio
ENSMUSG00000028603 Scp2 sterol carrier protein 2, liver protein_coding Mus_musculus

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