C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterol carrier protein 2, liver
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028603 Scp2 10090 - 4:108043839-108144998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030340 Scp2-001 108043839-108118532 protein_coding
  ENSMUST00000106701 Scp2-007 108044550-108071419 protein_coding
  ENSMUST00000122878 Scp2-008 108044378-108071363 processed_transcript
  ENSMUST00000123792 Scp2-004 108091004-108118395 processed_transcript
  ENSMUST00000130776 Scp2-006 108102309-108144998 protein_coding
  ENSMUST00000135379 Scp2-003 108044835-108118476 processed_transcript
  ENSMUST00000143340 Scp2-005 108091313-108144994 processed_transcript
  ENSMUST00000145721 Scp2-009 108044268-108047879 processed_transcript
  ENSMUST00000149106 Scp2-002 108087012-108118504 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030340ENSMUST00000106701ENSMUST00000122878ENSMUST00000135379ENSMUST00000145721
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030340 33.114±8.95 10.613±2.71 21.307±2.77 6.523±0.93 20.706±2.58 10.486±1.16 22.655±0.61 45.417±1.49 97.175±70.23 12.272±1.48 26.612±0.94 19.815±4.14 13.210±7.16 3.928±0.46
ENSMUST00000106701 147.197±62.24 40.836±3.52 134.293±21.03 34.372±6.86 84.943±31.28 21.815±3.35 72.115±1.74 171.663±16.37 304.638±131.65 53.429±3.41 66.185±5.61 56.826±43.37 57.932±24.99 9.547±2.02
ENSMUST00000122878 109.518±44.21 20.298±1.46 N/A 8.370±0.19 85.581±51.65 17.363±1.61 50.358±6.05 121.032±16.23 331.255±77.46 45.466±6.88 N/A 18.802±3.14 N/A N/A
ENSMUST00000135379 N/A N/A N/A 18.720±0.00 N/A N/A N/A N/A N/A N/A N/A 63.978±0.00 19.619±4.62 24.574±0.00
ENSMUST00000145721 N/A N/A N/A 15.589±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000062 IEA fatty-acyl-CoA binding
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005777 TAS peroxisome
GO:0006637 TAS acyl-CoA metabolic process
GO:0006694 IEA steroid biosynthetic process
GO:0006701 IEA progesterone biosynthetic process
GO:0007031 IMP peroxisome organization
GO:0008526 IEA phosphatidylinositol transporter activity
GO:0015485 IEA cholesterol binding
GO:0015914 IEA phospholipid transport
GO:0016020 IEA membrane
GO:0032385 IEA positive regulation of intracellular cholesterol transport
GO:0032959 IEA inositol trisphosphate biosynthetic process
GO:0033814 IEA propanoyl-CoA C-acyltransferase activity
GO:0036042 IEA long-chain fatty acyl-CoA binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0045940 IEA positive regulation of steroid metabolic process
GO:0050632 TAS propionyl-CoA C2-trimethyltridecanoyltransferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070538 IEA oleic acid binding
GO:0072659 IEA protein localization to plasma membrane
GO:1901373 IEA lipid hydroperoxide transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036496 scp2b sterol carrier protein 2b protein_coding Danio_rerio
ENSG00000116171 SCP2 sterol carrier protein 2 protein_coding Homo_sapiens

Loading