C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol carrier protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478631 SCP2-009 ENSG00000116171 9606 + 1:52927277-53051401 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0016747 IEA transferase activity, transferring acyl groups other than amino-acyl groups
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030340 Scp2-001 protein_coding Mus_musculus 0 1131
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1074
ENSMUST00000123792 Scp2-004 processed_transcript Mus_musculus 0 713
ENSMUST00000106701 Scp2-007 protein_coding Mus_musculus 0 691
ENSMUST00000135379 Scp2-003 processed_transcript Mus_musculus 0 597
ENSMUST00000069449 Rras2-201 protein_coding Mus_musculus 0 597
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 558
ENSMUST00000149106 Scp2-002 protein_coding Mus_musculus 0 508
ENSMUST00000072166 Scp2-ps2-201 processed_pseudogene Mus_musculus 0 505
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 257
ENSMUST00000156050 Tubb5-002 retained_intron Mus_musculus 3e-40 172
ENSDART00000013079 scp2a-001 protein_coding Danio_rerio 4e-33 148
ENSMUST00000134978 Tubb5-003 protein_coding Mus_musculus 0.00000000000003 86
ENSMUST00000143340 Scp2-005 processed_transcript Mus_musculus 0 616

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