C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol carrier protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000407246 SCP2-011 ENSG00000116171 9606 + 1:52927286-53051260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverLungMuscleOvaryPlacentaENST00000407246
Transcript ID Brain Heart Liver Lung Muscle Ovary Placenta
ENST00000407246 4.406±0.00 10.492±0.00 67.986±0.00 8.583±0.00 3.993±0.00 9.318±0.00 2.618±0.74

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000062 IDA fatty-acyl-CoA binding
GO:0003824 IEA catalytic activity
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005777 IDA peroxisome
GO:0005782 TAS peroxisomal matrix
GO:0006694 IDA steroid biosynthetic process
GO:0006699 TAS bile acid biosynthetic process
GO:0006701 IDA progesterone biosynthetic process
GO:0006869 IEA lipid transport
GO:0008152 IEA metabolic process
GO:0008206 TAS bile acid metabolic process
GO:0008526 IDA phosphatidylinositol transporter activity
GO:0015485 IDA cholesterol binding
GO:0015914 IDA phospholipid transport
GO:0016020 IDA membrane
GO:0016747 IEA transferase activity, transferring acyl groups other than amino-acyl groups
GO:0032385 IDA positive regulation of intracellular cholesterol transport
GO:0032959 IDA inositol trisphosphate biosynthetic process
GO:0033540 TAS fatty acid beta-oxidation using acyl-CoA oxidase
GO:0033559 TAS unsaturated fatty acid metabolic process
GO:0033814 IEA propanoyl-CoA C-acyltransferase activity
GO:0036042 IDA long-chain fatty acyl-CoA binding
GO:0036109 TAS alpha-linolenic acid metabolic process
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045940 IDA positive regulation of steroid metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0070538 IDA oleic acid binding
GO:0072659 IDA protein localization to plasma membrane
GO:1901373 IDA lipid hydroperoxide transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030340 Scp2-001 protein_coding Mus_musculus 0 1744
ENSMUST00000106701 Scp2-007 protein_coding Mus_musculus 0 695
ENSMUST00000135379 Scp2-003 processed_transcript Mus_musculus 0 680
ENSMUST00000123792 Scp2-004 processed_transcript Mus_musculus 0 558
ENSMUST00000149106 Scp2-002 protein_coding Mus_musculus 0 508
ENSMUST00000072166 Scp2-ps2-201 processed_pseudogene Mus_musculus 0 505
ENSDART00000013079 scp2a-001 protein_coding Danio_rerio 0 387
ENSMUST00000143340 Scp2-005 processed_transcript Mus_musculus 0 484

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