C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nephrosis 2, idiopathic, steroid-resistant (podocin)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116218 NPHS2 9606 - 1:179550539-179575952 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000367615 NPHS2-001 179550539-179575933 protein_coding
  ENST00000367616 NPHS2-002 179550539-179575952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastKidneyLiverENST00000367615ENST00000367616
Transcript ID Bladder Breast Kidney Liver
ENST00000367615 9.634±0.00 N/A 51.963±0.00 0.081±0.00
ENST00000367616 4.671±0.00 0.232±0.00 15.505±0.00 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WC CIL_0001WC_0002 CGP 1:179365720-179575952
CIL_0001WB CIL_0001WB_0002 CGP 1:179550539-179691272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0005911 IDA cell-cell junction
GO:0007588 IEA excretion
GO:0031235 IDA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0031532 IDA actin cytoskeleton reorganization
GO:0036057 IDA slit diaphragm
GO:0043234 IDA protein complex
GO:0045121 IDA membrane raft
GO:0070062 IDA extracellular vesicular exosome
GO:0072249 IEP metanephric glomerular visceral epithelial cell development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042850 nphs2 nephrosis 2, idiopathic, steroid-resistant (podocin) protein_coding Danio_rerio
ENSMUSG00000026602 Nphs2 nephrosis 2, podocin protein_coding Mus_musculus

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