C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001WC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000062355-ENSDARG00000042850 CGP 7955 22:17459191-17478545
GeneTranscriptPositionBiotype
ENSDARG00000042850 (nphs2)
nephrosis 2, idiopathic, steroid-resistant (podocin) 		ENSDART00000062891 (nphs2-201) 17473251-17478545 protein_coding
ENSDART00000136119 (nphs2-001) 17473247-17478545 protein_coding
ENSDART00000144505 (nphs2-002) 17475717-17478237 processed_transcript
ENSDARG00000062355 (axdnd1)
axonemal dynein light chain domain containing 1 		ENSDART00000090069 (axdnd1-201) 17459191-17472786 protein_coding
ENSDART00000136908 (axdnd1-001) 17470117-17472794 protein_coding

Danio rerio Ensembl (Zv9)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001WC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162779-ENSG00000116218 CGP 9606 1:179365720-179575952
GeneTranscriptPositionBiotype
ENSG00000116218 (NPHS2)
nephrosis 2, idiopathic, steroid-resistant (podocin) 		ENST00000367615 (NPHS2-001) 179550539-179575933 protein_coding
ENST00000367616 (NPHS2-002) 179550539-179575952 protein_coding
ENSG00000224620 (MEF2AP1)
myocyte enhancer factor 2A pseudogene 1 		ENST00000454867 (MEF2AP1-001) 179447578-179448440 processed_pseudogene
ENSG00000236539 (HNRNPA1P54)
heterogeneous nuclear ribonucleoprotein A1 pseudogene 54 		ENST00000411857 (HNRNPA1P54-001) 179447602-179457315 processed_pseudogene
ENSG00000261250 (RP11-545A16.1)
 ENST00000569644 (RP11-545A16.1-001) 179543201-179548922 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WC_0001ENSDARG00000042850ENSDART00000062891ENSDART00000136119ENSDART00000144505ENSDARG00000062355ENSDART00000090069ENSDART00000136908CIL_0001WC_0002ENSG00000116218ENST00000367615ENST00000367616ENSG00000224620ENST00000454867ENSG00000236539ENST00000411857ENSG00000261250ENST00000569644
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001WC_0001ENSDARG00000042850ENSDART00000062891ENSDART00000136119ENSDART00000144505ENSDARG00000062355ENSDART00000090069ENSDART00000136908CIL_0001WC_0002ENSG00000116218ENST00000367615ENST00000367616ENSG00000224620ENST00000454867ENSG00000236539ENST00000411857ENSG00000261250ENST00000569644
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000042850 ENSDART00000062891 N/A N/A N/A 0.109±0.05 N/A N/A 0.114±0.00 3.692±0.31 N/A N/A 1.233±0.00 N/A N/A N/A
ENSDART00000136119 N/A N/A N/A 0.094±0.05 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000144505 N/A N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000062355 ENSDART00000090069 N/A N/A N/A 0.568±0.23 N/A N/A 0.123±0.07 0.676±0.63 N/A N/A 1.378±0.00 N/A N/A N/A
ENSDART00000136908 N/A N/A N/A 0.277±0.00 N/A N/A 0.434±0.00 0.776±0.00 0.041±0.00 N/A 0.899±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116218 ENST00000367615 N/A N/A 9.634±0.00 N/A N/A N/A N/A 51.963±0.00 0.081±0.00 N/A N/A N/A N/A N/A
ENST00000367616 N/A N/A 4.671±0.00 N/A 0.232±0.00 N/A N/A 15.505±0.00 0.187±0.00 N/A N/A N/A N/A N/A
ENSG00000224620 ENST00000454867 N/A N/A N/A 0.270±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236539 ENST00000411857 0.194±0.00 0.442±0.00 N/A 0.111±0.11 0.101±0.09 0.143±0.00 0.069±0.06 N/A 0.070±0.00 0.090±0.06 0.048±0.00 0.052±0.04 0.044±0.04 0.399±0.00
ENSG00000261250 ENST00000569644 0.046±0.00 0.057±0.00 0.120±0.00 0.052±0.00 0.045±0.00 0.203±0.18 0.032±0.00 0.159±0.00 0.013±0.00 0.055±0.00 0.003±0.00 0.009±0.00 N/A 0.134±0.09

Loading