C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine/arginine-rich splicing factor 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116350 SRSF4 9606 - 1:29147743-29181987 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373795 SRSF4-001 29147743-29181987 protein_coding
  ENST00000466448 SRSF4-002 29148671-29181882 processed_transcript
  ENST00000472353 SRSF4-006 29160382-29168639 processed_transcript
  ENST00000477193 SRSF4-003 29154872-29159540 processed_transcript
  ENST00000489898 SRSF4-004 29159384-29160469 processed_transcript
  ENST00000497015 SRSF4-005 29154697-29160563 processed_transcript
  ENST00000605204 SRSF4-007 29154736-29181890 nonsense_mediated_decay
  ENST00000622143 SRSF4-008 29154475-29159551 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373795ENST00000466448ENST00000497015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373795 10.928±0.00 29.516±0.00 2.411±0.00 7.186±3.77 8.750±5.61 23.162±19.56 11.683±9.66 16.468±15.28 10.834±3.43 38.467±33.70 51.840±0.00 20.528±13.14 24.053±8.66 15.580±2.22
ENST00000466448 28.164±0.00 32.257±0.00 N/A 18.894±0.00 19.621±0.00 29.171±0.00 N/A N/A N/A N/A N/A 22.006±0.00 27.836±0.00 22.182±2.25
ENST00000497015 N/A N/A N/A N/A 13.486±0.00 N/A N/A N/A 15.227±0.00 11.155±0.00 N/A 7.893±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0001 VISTA 1:28583201-29186892
CIL_0003PY CIL_0003PY_0002 CGP 1:29119428-29181987

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0002244 IEA hematopoietic progenitor cell differentiation
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006397 TAS mRNA processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000090077 srsf4 serine/arginine-rich splicing factor 4 protein_coding Danio_rerio
ENSMUSG00000028911 Srsf4 serine/arginine-rich splicing factor 4 protein_coding Mus_musculus

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