C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003PY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000095629-ENSDARG00000090077 CGP 7955 19:17148138-17164226
GeneTranscriptPositionBiotype
ENSDARG00000090077 (srsf4)
serine/arginine-rich splicing factor 4 		ENSDART00000105219 (srsf4-003) 17154652-17160453 retained_intron
ENSDART00000122914 (srsf4-201) 17154643-17164186 protein_coding
ENSDART00000125200 (srsf4-001) 17154639-17164226 protein_coding
ENSDART00000137823 (srsf4-002) 17161230-17164213 protein_coding
ENSDARG00000095629 (TMEM200B)
transmembrane protein 200B 		ENSDART00000142001 (TMEM200B-001) 17148138-17154245 protein_coding
CIL_0003PY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000253304-ENSG00000116350 CGP 9606 1:29119428-29181987
GeneTranscriptPositionBiotype
ENSG00000116350 (SRSF4)
serine/arginine-rich splicing factor 4 		ENST00000373795 (SRSF4-001) 29147743-29181987 protein_coding
ENST00000466448 (SRSF4-002) 29148671-29181882 processed_transcript
ENST00000472353 (SRSF4-006) 29160382-29168639 processed_transcript
ENST00000477193 (SRSF4-003) 29154872-29159540 processed_transcript
ENST00000489898 (SRSF4-004) 29159384-29160469 processed_transcript
ENST00000497015 (SRSF4-005) 29154697-29160563 processed_transcript
ENST00000605204 (SRSF4-007) 29154736-29181890 nonsense_mediated_decay
ENST00000622143 (SRSF4-008) 29154475-29159551 processed_transcript
ENSG00000159023 (EPB41)
erythrocyte membrane protein band 4.1 		ENST00000343067 (EPB41-201) 28887091-29120046 protein_coding
ENST00000347529 (EPB41-005) 28887172-29117114 protein_coding
ENST00000349460 (EPB41-004) 28887124-29117114 protein_coding
ENST00000356093 (EPB41-202) 28887091-29120046 protein_coding
ENST00000373797 (EPB41-002) 28914579-29065221 protein_coding
ENST00000373798 (EPB41-001) 28893741-29120046 protein_coding
ENST00000373800 (EPB41-003) 28887124-29117114 protein_coding
ENST00000460378 (EPB41-006) 29096232-29120038 processed_transcript
ENST00000462032 (EPB41-009) 29097587-29109738 processed_transcript
ENST00000482464 (EPB41-007) 28887121-28993456 processed_transcript
ENST00000488277 (EPB41-010) 29058604-29097849 processed_transcript
ENST00000490308 (EPB41-008) 29064957-29109358 processed_transcript
ENSG00000225750 (RP11-242O24.3)
 ENST00000413004 (RP11-242O24.3-001) 29144494-29146994 lincRNA
ENSG00000227637 (RP11-242O24.5)
 ENST00000450108 (RP11-242O24.5-001) 29152489-29152991 antisense
ENSG00000253304 (TMEM200B)
transmembrane protein 200B 		ENST00000420504 (TMEM200B-002) 29119434-29122501 protein_coding
ENST00000521452 (TMEM200B-001) 29119428-29123935 protein_coding
ENSG00000277916 (uc_338)
TUC338 		ENST00000611385 (uc_338.1-226) 29171285-29171453 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PY_0001ENSDARG00000090077ENSDART00000105219ENSDART00000122914ENSDART00000125200ENSDART00000137823ENSDARG00000095629ENSDART00000142001CIL_0003PY_0002ENSG00000116350ENST00000373795ENST00000466448ENST00000472353ENST00000477193ENST00000489898ENST00000497015ENST00000605204ENST00000622143ENSG00000159023ENST00000343067ENST00000347529ENST00000349460ENST00000356093ENST00000373797ENST00000373798ENST00000373800ENST00000460378ENST00000462032ENST00000482464ENST00000488277ENST00000490308ENSG00000225750ENST00000413004ENSG00000227637ENST00000450108ENSG00000253304ENST00000420504ENST00000521452ENSG00000277916ENST00000611385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003PY_0001ENSDARG00000090077ENSDART00000105219ENSDART00000122914ENSDART00000125200ENSDART00000137823ENSDARG00000095629ENSDART00000142001CIL_0003PY_0002ENSG00000116350ENST00000373795ENST00000466448ENST00000497015ENSG00000159023ENST00000343067ENST00000347529ENST00000356093ENST00000373798ENST00000460378ENSG00000225750ENST00000413004ENSG00000227637ENST00000450108ENSG00000253304ENST00000420504ENST00000521452ENSG00000277916ENST00000611385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000090077 ENSDART00000105219 N/A N/A N/A 21.079±4.63 N/A N/A 11.111±4.36 21.054±1.30 1.539±0.00 N/A 5.847±0.00 N/A N/A N/A
ENSDART00000122914 N/A N/A N/A 32.812±6.02 N/A N/A 79.377±14.20 91.257±19.04 0.807±0.00 N/A N/A N/A N/A N/A
ENSDART00000125200 N/A N/A N/A 24.326±3.53 N/A N/A 15.067±0.35 20.817±0.00 N/A N/A 5.982±0.00 N/A N/A N/A
ENSDART00000137823 N/A N/A N/A 14.126±1.74 N/A N/A 7.152±0.76 N/A 1.676±0.00 N/A N/A N/A N/A N/A
ENSDARG00000095629 ENSDART00000142001 N/A N/A N/A 11.458±3.01 N/A N/A 1.037±0.64 0.996±0.99 0.067±0.00 N/A 0.578±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116350 ENST00000373795 10.928±0.00 29.516±0.00 2.411±0.00 7.186±3.77 8.750±5.61 23.162±19.56 11.683±9.66 16.468±15.28 10.834±3.43 38.467±33.70 51.840±0.00 20.528±13.14 24.053±8.66 15.580±2.22
ENST00000466448 28.164±0.00 32.257±0.00 N/A 18.894±0.00 19.621±0.00 29.171±0.00 N/A N/A N/A N/A N/A 22.006±0.00 27.836±0.00 22.182±2.25
ENST00000472353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497015 N/A N/A N/A N/A 13.486±0.00 N/A N/A N/A 15.227±0.00 11.155±0.00 N/A 7.893±0.00 N/A N/A
ENST00000605204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000159023 ENST00000343067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.671±0.00 N/A
ENST00000347529 N/A N/A 0.848±0.00 N/A N/A N/A 0.604±0.00 N/A 2.428±0.00 3.661±0.00 N/A N/A N/A N/A
ENST00000349460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000356093 N/A N/A 0.819±0.00 0.728±0.25 N/A 1.360±0.00 0.836±0.00 0.411±0.00 1.746±0.00 1.256±0.00 1.525±0.00 6.695±2.67 1.749±0.03 N/A
ENST00000373797 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373798 N/A N/A N/A N/A 1.213±0.00 N/A N/A 0.675±0.00 N/A 1.879±0.00 N/A N/A N/A 6.861±0.00
ENST00000373800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460378 N/A N/A N/A 0.376±0.00 N/A N/A N/A 0.922±0.00 N/A N/A 0.713±0.00 7.979±0.00 N/A N/A
ENST00000462032 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225750 ENST00000413004 N/A N/A N/A N/A 0.365±0.00 N/A 0.046±0.00 N/A N/A N/A N/A 0.133±0.03 N/A 0.106±0.00
ENSG00000227637 ENST00000450108 0.160±0.00 N/A 0.422±0.00 0.532±0.00 0.439±0.00 N/A 0.227±0.02 0.322±0.00 N/A 0.895±0.00 N/A 0.426±0.06 0.488±0.00 N/A
ENSG00000253304 ENST00000420504 N/A N/A N/A N/A N/A 4.892±0.00 N/A N/A N/A N/A N/A 15.782±0.00 N/A N/A
ENST00000521452 10.536±0.00 9.575±0.00 N/A 1.687±0.72 7.283±3.83 11.448±0.00 N/A 7.450±0.00 4.348±0.73 N/A 3.736±0.00 22.329±11.93 N/A 20.799±7.51
ENSG00000277916 ENST00000611385 N/A N/A 1.908±0.00 0.101±0.00 0.559±0.00 N/A N/A 0.186±0.00 0.985±0.00 N/A N/A 2.968±0.44 1.012±0.00 0.507±0.00

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