C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: translin-associated factor X
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000116918 TSNAX 9606 + 1:231528653-231566524 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000366639 TSNAX-001 231528653-231566524 protein_coding
  ENST00000413309 TSNAX-003 231528655-231561229 protein_coding
  ENST00000475168 TSNAX-002 231534120-231566524 retained_intron
  ENST00000476913 TSNAX-004 231529263-231542849 retained_intron
  ENST00000602825 TSNAX-005 231528667-231554694 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000366639ENST00000475168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000366639 13.191±0.00 11.463±0.00 1.503±0.00 11.839±6.28 8.304±2.35 4.851±1.06 6.355±2.79 8.273±4.19 5.867±1.42 4.679±0.45 14.633±12.01 6.297±1.61 5.460±1.54 12.418±2.12
ENST00000475168 N/A N/A N/A N/A N/A 0.834±0.00 N/A 0.484±0.00 N/A 0.997±0.00 0.360±0.00 0.644±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AY CIL_0006AY_0001 CGP 1:231363751-231819244
CIL_0006B1 CIL_0006B1_0001 CGP 1:231528653-232041272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 TAS DNA binding
GO:0005634 IEA nucleus
GO:0005794 IEA Golgi apparatus
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008565 TAS protein transporter activity
GO:0015031 TAS protein transport
GO:0030154 IEA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038995 tsnax translin-associated factor X protein_coding Danio_rerio
ENSMUSG00000056820 Tsnax translin-associated factor X protein_coding Mus_musculus

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